prometheus/tsdb/db.go

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// Copyright 2017 The Prometheus Authors
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
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// Package tsdb implements a time series storage for float64 sample data.
package tsdb
import (
"context"
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"fmt"
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"io"
"io/fs"
"math"
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"os"
"path/filepath"
"sort"
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"strconv"
"strings"
"sync"
"time"
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"github.com/go-kit/log"
"github.com/go-kit/log/level"
"github.com/oklog/ulid"
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"github.com/pkg/errors"
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"github.com/prometheus/client_golang/prometheus"
"go.uber.org/atomic"
"golang.org/x/sync/errgroup"
"github.com/prometheus/prometheus/config"
"github.com/prometheus/prometheus/model/labels"
"github.com/prometheus/prometheus/storage"
"github.com/prometheus/prometheus/tsdb/chunkenc"
"github.com/prometheus/prometheus/tsdb/chunks"
tsdb_errors "github.com/prometheus/prometheus/tsdb/errors"
"github.com/prometheus/prometheus/tsdb/fileutil"
_ "github.com/prometheus/prometheus/tsdb/goversion" // Load the package into main to make sure minium Go version is met.
"github.com/prometheus/prometheus/tsdb/hashcache"
"github.com/prometheus/prometheus/tsdb/index"
"github.com/prometheus/prometheus/tsdb/tsdbutil"
"github.com/prometheus/prometheus/tsdb/wal"
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)
const (
// Default duration of a block in milliseconds.
DefaultBlockDuration = int64(2 * time.Hour / time.Millisecond)
// Block dir suffixes to make deletion and creation operations atomic.
// We decided to do suffixes instead of creating meta.json as last (or delete as first) one,
// because in error case you still can recover meta.json from the block content within local TSDB dir.
// TODO(bwplotka): TSDB can end up with various .tmp files (e.g meta.json.tmp, WAL or segment tmp file. Think
// about removing those too on start to save space. Currently only blocks tmp dirs are removed.
tmpForDeletionBlockDirSuffix = ".tmp-for-deletion"
tmpForCreationBlockDirSuffix = ".tmp-for-creation"
// Pre-2.21 tmp dir suffix, used in clean-up functions.
tmpLegacy = ".tmp"
)
// ErrNotReady is returned if the underlying storage is not ready yet.
var ErrNotReady = errors.New("TSDB not ready")
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// DefaultOptions used for the DB. They are sane for setups using
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// millisecond precision timestamps.
func DefaultOptions() *Options {
return &Options{
WALSegmentSize: wal.DefaultSegmentSize,
MaxBlockChunkSegmentSize: chunks.DefaultChunkSegmentSize,
RetentionDuration: int64(15 * 24 * time.Hour / time.Millisecond),
MinBlockDuration: DefaultBlockDuration,
MaxBlockDuration: DefaultBlockDuration,
NoLockfile: false,
AllowOverlappingCompaction: false,
AllowOverlappingQueries: false,
WALCompression: false,
StripeSize: DefaultStripeSize,
HeadChunksWriteBufferSize: chunks.DefaultWriteBufferSize,
IsolationDisabled: defaultIsolationDisabled,
HeadChunksEndTimeVariance: 0,
HeadChunksWriteQueueSize: chunks.DefaultWriteQueueSize,
OutOfOrderCapMin: DefaultOutOfOrderCapMin,
OutOfOrderCapMax: DefaultOutOfOrderCapMax,
}
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}
// Options of the DB storage.
type Options struct {
// Segments (wal files) max size.
// WALSegmentSize = 0, segment size is default size.
// WALSegmentSize > 0, segment size is WALSegmentSize.
// WALSegmentSize < 0, wal is disabled.
WALSegmentSize int
// MaxBlockChunkSegmentSize is the max size of block chunk segment files.
// MaxBlockChunkSegmentSize = 0, chunk segment size is default size.
// MaxBlockChunkSegmentSize > 0, chunk segment size is MaxBlockChunkSegmentSize.
MaxBlockChunkSegmentSize int64
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// Duration of persisted data to keep.
// Unit agnostic as long as unit is consistent with MinBlockDuration and MaxBlockDuration.
// Typically it is in milliseconds.
RetentionDuration int64
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// Maximum number of bytes in blocks to be retained.
// 0 or less means disabled.
// NOTE: For proper storage calculations need to consider
// the size of the WAL folder which is not added when calculating
// the current size of the database.
MaxBytes int64
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// NoLockfile disables creation and consideration of a lock file.
NoLockfile bool
// Querying on overlapping blocks are allowed if AllowOverlappingQueries is true.
// Since querying is a required operation for TSDB, if there are going to be
// overlapping blocks, then this should be set to true.
// NOTE: Do not use this directly in DB. Use it via DB.AllowOverlappingQueries().
AllowOverlappingQueries bool
// Compaction of overlapping blocks are allowed if AllowOverlappingCompaction is true.
// This is an optional flag for overlapping blocks.
AllowOverlappingCompaction bool
// WALCompression will turn on Snappy compression for records on the WAL.
WALCompression bool
// StripeSize is the size in entries of the series hash map. Reducing the size will save memory but impact performance.
StripeSize int
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// The timestamp range of head blocks after which they get persisted.
// It's the minimum duration of any persisted block.
// Unit agnostic as long as unit is consistent with RetentionDuration and MaxBlockDuration.
// Typically it is in milliseconds.
MinBlockDuration int64
// The maximum timestamp range of compacted blocks.
// Unit agnostic as long as unit is consistent with MinBlockDuration and RetentionDuration.
// Typically it is in milliseconds.
MaxBlockDuration int64
// HeadChunksWriteBufferSize configures the write buffer size used by the head chunks mapper.
HeadChunksWriteBufferSize int
// HeadChunksEndTimeVariance is how much variance (between 0 and 1) should be applied to the chunk end time,
// to spread chunks writing across time. Doesn't apply to the last chunk of the chunk range. 0 to disable variance.
HeadChunksEndTimeVariance float64
Write m-map chunks in async via a queue while predicting the m-map chunk refs (#57) * write chunks via queue, predicting chunkrefs * fixes * linter * cleanup * better test coverage * deduplicate operations when cutting file * better comments * fix race * improvements based on PR feedback * comments * concurrent correctness test of write queue * linter * use isStarted flag in chunk write queue * separate mutex for isStarted * fixing tests * fix race in test * PR feedback * add license headers * PR feedback * pr feedback * dont recreate workerCtrl channel * address PR feedback in high concurrency read and write test * refactor the high concurrency write queue test * pr feedback * use require.Eventually * typo * Fixing comment Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com> * use buffered chan for chunk write queue * fix races * address feedback on PR * better comment * less type casts * dont reeimplement varint * move mtx above property it protects * improve tests by using wg instead of inspecting queue * add comment * add comment * writeChunkF comment * rename isStarted -> isRunning * prevent panic when double stopping * fix variable name in comment * delete outdated comment * naming and comment fixes in TestChunkWriteQueue_WrappingAroundSizeLimit * use require.False instead of require.Equal(t, false * always enable chunk write queue * dont call callback with lock held * undo rename of curFileSequence to curFileSeq * fix accidental change * fix comment * Better syntax Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com> * Better wording in comment Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com> * better comments to explain the use of coordinator chans in test * fix test which broke to the async writing of chunks * undo previous renaming of shadowing variable * rename var threadID to workerID * rename variables based on PR feedback * rename pos -> ts * better implementation of whileNotCanceled * update querySeriesRef before using it * rename labels -> lbls * initialize the chunk write queue operations metric with all possible labels * dont return error from CutNewFile * recreate chunk ref map regularly to free * limit how often we recreate the chunk ref map * fix typo in comment * better comment Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com>
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// HeadChunksWriteQueueSize configures the size of the chunk write queue used in the head chunks mapper.
HeadChunksWriteQueueSize int
// SeriesLifecycleCallback specifies a list of callbacks that will be called during a lifecycle of a series.
// It is always a no-op in Prometheus and mainly meant for external users who import TSDB.
SeriesLifecycleCallback SeriesLifecycleCallback
// BlocksToDelete is a function which returns the blocks which can be deleted.
// It is always the default time and size based retention in Prometheus and
// mainly meant for external users who import TSDB.
BlocksToDelete BlocksToDeleteFunc
// Enables the in memory exemplar storage.
EnableExemplarStorage bool
// Enables the snapshot of in-memory chunks on shutdown. This makes restarts faster.
EnableMemorySnapshotOnShutdown bool
// MaxExemplars sets the size, in # of exemplars stored, of the single circular buffer used to store exemplars in memory.
// See tsdb/exemplar.go, specifically the CircularExemplarStorage struct and it's constructor NewCircularExemplarStorage.
MaxExemplars int64
// Disables isolation between reads and in-flight appends.
IsolationDisabled bool
// SeriesHashCache specifies the series hash cache used when querying shards via Querier.Select().
// If nil, the cache won't be used.
SeriesHashCache *hashcache.SeriesHashCache
// OutOfOrderTimeWindow specifies how much out of order is allowed, if any.
// This can change during run-time, so this value from here should only be used
// while initialising.
OutOfOrderTimeWindow int64
// OutOfOrderCapMin minimum capacity for OOO chunks (in samples).
// If it is <=0, the default value is assumed.
OutOfOrderCapMin int64
// OutOfOrderCapMax is maximum capacity for OOO chunks (in samples).
// If it is <=0, the default value is assumed.
OutOfOrderCapMax int64
// Temporary flag which we use to select whether we want to use the new or the old chunk disk mapper.
NewChunkDiskMapper bool
}
type BlocksToDeleteFunc func(blocks []*Block) map[ulid.ULID]struct{}
// DB handles reads and writes of time series falling into
// a hashed partition of a seriedb.
type DB struct {
dir string
locker *tsdbutil.DirLocker
logger log.Logger
metrics *dbMetrics
opts *Options
chunkPool chunkenc.Pool
compactor Compactor
blocksToDelete BlocksToDeleteFunc
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// Mutex for that must be held when modifying the general block layout.
mtx sync.RWMutex
blocks []*Block
head *Head
compactc chan struct{}
donec chan struct{}
stopc chan struct{}
// cmtx ensures that compactions and deletions don't run simultaneously.
cmtx sync.Mutex
// autoCompactMtx ensures that no compaction gets triggered while
// changing the autoCompact var.
autoCompactMtx sync.Mutex
autoCompact bool
// Cancel a running compaction when a shutdown is initiated.
compactCancel context.CancelFunc
// oooWasEnabled is true if out of order support was enabled at least one time
// during the time TSDB was up. In which case we need to keep supporting
// out-of-order compaction and vertical queries.
oooWasEnabled atomic.Bool
registerer prometheus.Registerer
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}
type dbMetrics struct {
loadedBlocks prometheus.GaugeFunc
symbolTableSize prometheus.GaugeFunc
reloads prometheus.Counter
reloadsFailed prometheus.Counter
compactionsFailed prometheus.Counter
compactionsTriggered prometheus.Counter
compactionsSkipped prometheus.Counter
sizeRetentionCount prometheus.Counter
timeRetentionCount prometheus.Counter
startTime prometheus.GaugeFunc
tombCleanTimer prometheus.Histogram
blocksBytes prometheus.Gauge
maxBytes prometheus.Gauge
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}
func newDBMetrics(db *DB, r prometheus.Registerer) *dbMetrics {
m := &dbMetrics{}
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m.loadedBlocks = prometheus.NewGaugeFunc(prometheus.GaugeOpts{
Name: "prometheus_tsdb_blocks_loaded",
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Help: "Number of currently loaded data blocks",
}, func() float64 {
db.mtx.RLock()
defer db.mtx.RUnlock()
return float64(len(db.blocks))
})
m.symbolTableSize = prometheus.NewGaugeFunc(prometheus.GaugeOpts{
Name: "prometheus_tsdb_symbol_table_size_bytes",
Help: "Size of symbol table in memory for loaded blocks",
}, func() float64 {
db.mtx.RLock()
blocks := db.blocks[:]
db.mtx.RUnlock()
symTblSize := uint64(0)
for _, b := range blocks {
symTblSize += b.GetSymbolTableSize()
}
return float64(symTblSize)
})
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m.reloads = prometheus.NewCounter(prometheus.CounterOpts{
Name: "prometheus_tsdb_reloads_total",
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Help: "Number of times the database reloaded block data from disk.",
})
m.reloadsFailed = prometheus.NewCounter(prometheus.CounterOpts{
Name: "prometheus_tsdb_reloads_failures_total",
Help: "Number of times the database failed to reloadBlocks block data from disk.",
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})
m.compactionsTriggered = prometheus.NewCounter(prometheus.CounterOpts{
Name: "prometheus_tsdb_compactions_triggered_total",
Help: "Total number of triggered compactions for the partition.",
})
m.compactionsFailed = prometheus.NewCounter(prometheus.CounterOpts{
Name: "prometheus_tsdb_compactions_failed_total",
Help: "Total number of compactions that failed for the partition.",
})
m.timeRetentionCount = prometheus.NewCounter(prometheus.CounterOpts{
Name: "prometheus_tsdb_time_retentions_total",
Help: "The number of times that blocks were deleted because the maximum time limit was exceeded.",
})
m.compactionsSkipped = prometheus.NewCounter(prometheus.CounterOpts{
Name: "prometheus_tsdb_compactions_skipped_total",
Help: "Total number of skipped compactions due to disabled auto compaction.",
})
m.startTime = prometheus.NewGaugeFunc(prometheus.GaugeOpts{
Name: "prometheus_tsdb_lowest_timestamp",
Help: "Lowest timestamp value stored in the database. The unit is decided by the library consumer.",
}, func() float64 {
db.mtx.RLock()
defer db.mtx.RUnlock()
if len(db.blocks) == 0 {
return float64(db.head.MinTime())
}
return float64(db.blocks[0].meta.MinTime)
})
m.tombCleanTimer = prometheus.NewHistogram(prometheus.HistogramOpts{
Name: "prometheus_tsdb_tombstone_cleanup_seconds",
Help: "The time taken to recompact blocks to remove tombstones.",
})
m.blocksBytes = prometheus.NewGauge(prometheus.GaugeOpts{
Name: "prometheus_tsdb_storage_blocks_bytes",
Help: "The number of bytes that are currently used for local storage by all blocks.",
})
m.maxBytes = prometheus.NewGauge(prometheus.GaugeOpts{
Name: "prometheus_tsdb_retention_limit_bytes",
Help: "Max number of bytes to be retained in the tsdb blocks, configured 0 means disabled",
})
m.sizeRetentionCount = prometheus.NewCounter(prometheus.CounterOpts{
Name: "prometheus_tsdb_size_retentions_total",
Help: "The number of times that blocks were deleted because the maximum number of bytes was exceeded.",
})
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if r != nil {
r.MustRegister(
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m.loadedBlocks,
m.symbolTableSize,
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m.reloads,
m.reloadsFailed,
m.compactionsFailed,
m.compactionsTriggered,
m.compactionsSkipped,
m.sizeRetentionCount,
m.timeRetentionCount,
m.startTime,
m.tombCleanTimer,
m.blocksBytes,
m.maxBytes,
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)
}
return m
}
// DBStats contains statistics about the DB separated by component (eg. head).
React UI: Add Starting Screen (#8662) * Added walreplay API endpoint Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added starting page to react-ui Signed-off-by: Levi Harrison <git@leviharrison.dev> * Documented the new endpoint Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed typos Signed-off-by: Levi Harrison <git@leviharrison.dev> Co-authored-by: Julius Volz <julius.volz@gmail.com> * Removed logo Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed isResponding to isUnexpected Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed width of progress bar Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed width of progress bar Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added DB stats object Signed-off-by: Levi Harrison <git@leviharrison.dev> * Updated starting page to work with new fields Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 2) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 3) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (and also implementing a method this time) (pt. 4) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (and also implementing a method this time) (pt. 5) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed const to let Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 6) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Remove SetStats method Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added comma Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed api Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed to triple equals Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed data response types Signed-off-by: Levi Harrison <git@leviharrison.dev> * Don't return pointer Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed version Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed interface issue Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed pointer Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed copying lock value error Signed-off-by: Levi Harrison <git@leviharrison.dev> Co-authored-by: Julius Volz <julius.volz@gmail.com>
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// They are available before the DB has finished initializing.
type DBStats struct {
Head *HeadStats
}
// NewDBStats returns a new DBStats object initialized using the
// the new function from each component.
func NewDBStats() *DBStats {
return &DBStats{
Head: NewHeadStats(),
}
}
// ErrClosed is returned when the db is closed.
var ErrClosed = errors.New("db already closed")
// DBReadOnly provides APIs for read only operations on a database.
// Current implementation doesn't support concurrency so
// all API calls should happen in the same go routine.
type DBReadOnly struct {
logger log.Logger
dir string
closers []io.Closer
closed chan struct{}
}
// OpenDBReadOnly opens DB in the given directory for read only operations.
func OpenDBReadOnly(dir string, l log.Logger) (*DBReadOnly, error) {
if _, err := os.Stat(dir); err != nil {
return nil, errors.Wrap(err, "opening the db dir")
}
if l == nil {
l = log.NewNopLogger()
}
return &DBReadOnly{
logger: l,
dir: dir,
closed: make(chan struct{}),
}, nil
}
// FlushWAL creates a new block containing all data that's currently in the memory buffer/WAL.
// Samples that are in existing blocks will not be written to the new block.
// Note that if the read only database is running concurrently with a
// writable database then writing the WAL to the database directory can race.
func (db *DBReadOnly) FlushWAL(dir string) (returnErr error) {
blockReaders, err := db.Blocks()
if err != nil {
return errors.Wrap(err, "read blocks")
}
maxBlockTime := int64(math.MinInt64)
if len(blockReaders) > 0 {
maxBlockTime = blockReaders[len(blockReaders)-1].Meta().MaxTime
}
w, err := wal.Open(db.logger, filepath.Join(db.dir, "wal"))
if err != nil {
return err
}
var wbl *wal.WAL
wblDir := filepath.Join(db.dir, wal.WblDirName)
if _, err := os.Stat(wblDir); !os.IsNotExist(err) {
wbl, err = wal.Open(db.logger, wblDir)
if err != nil {
return err
}
}
opts := DefaultHeadOptions()
opts.ChunkDirRoot = db.dir
head, err := NewHead(nil, db.logger, w, wbl, opts, NewHeadStats())
if err != nil {
return err
}
defer func() {
returnErr = tsdb_errors.NewMulti(
returnErr,
errors.Wrap(head.Close(), "closing Head"),
).Err()
}()
// Set the min valid time for the ingested wal samples
// to be no lower than the maxt of the last block.
if err := head.Init(maxBlockTime); err != nil {
return errors.Wrap(err, "read WAL")
}
mint := head.MinTime()
maxt := head.MaxTime()
rh := NewRangeHead(head, mint, maxt)
compactor, err := NewLeveledCompactor(
context.Background(),
nil,
db.logger,
ExponentialBlockRanges(DefaultOptions().MinBlockDuration, 3, 5),
chunkenc.NewPool(),
nil,
false,
)
if err != nil {
return errors.Wrap(err, "create leveled compactor")
}
// Add +1 millisecond to block maxt because block intervals are half-open: [b.MinTime, b.MaxTime).
// Because of this block intervals are always +1 than the total samples it includes.
_, err = compactor.Write(dir, rh, mint, maxt+1, nil)
return errors.Wrap(err, "writing WAL")
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
func (db *DBReadOnly) loadDataAsQueryable(maxt int64) (storage.SampleAndChunkQueryable, error) {
select {
case <-db.closed:
return nil, ErrClosed
default:
}
blockReaders, err := db.Blocks()
if err != nil {
return nil, err
}
blocks := make([]*Block, len(blockReaders))
for i, b := range blockReaders {
b, ok := b.(*Block)
if !ok {
return nil, errors.New("unable to convert a read only block to a normal block")
}
blocks[i] = b
}
opts := DefaultHeadOptions()
opts.ChunkDirRoot = db.dir
head, err := NewHead(nil, db.logger, nil, nil, opts, NewHeadStats())
if err != nil {
return nil, err
}
maxBlockTime := int64(math.MinInt64)
if len(blocks) > 0 {
maxBlockTime = blocks[len(blocks)-1].Meta().MaxTime
}
// Also add the WAL if the current blocks don't cover the requests time range.
if maxBlockTime <= maxt {
M-map full chunks of Head from disk (#6679) When appending to the head and a chunk is full it is flushed to the disk and m-mapped (memory mapped) to free up memory Prom startup now happens in these stages - Iterate the m-maped chunks from disk and keep a map of series reference to its slice of mmapped chunks. - Iterate the WAL as usual. Whenever we create a new series, look for it's mmapped chunks in the map created before and add it to that series. If a head chunk is corrupted the currpted one and all chunks after that are deleted and the data after the corruption is recovered from the existing WAL which means that a corruption in m-mapped files results in NO data loss. [Mmaped chunks format](https://github.com/prometheus/prometheus/blob/master/tsdb/docs/format/head_chunks.md) - main difference is that the chunk for mmaping now also includes series reference because there is no index for mapping series to chunks. [The block chunks](https://github.com/prometheus/prometheus/blob/master/tsdb/docs/format/chunks.md) are accessed from the index which includes the offsets for the chunks in the chunks file - example - chunks of series ID have offsets 200, 500 etc in the chunk files. In case of mmaped chunks, the offsets are stored in memory and accessed from that. During WAL replay, these offsets are restored by iterating all m-mapped chunks as stated above by matching the series id present in the chunk header and offset of that chunk in that file. **Prombench results** _WAL Replay_ 1h Wal reply time 30% less wal reply time - 4m31 vs 3m36 2h Wal reply time 20% less wal reply time - 8m16 vs 7m _Memory During WAL Replay_ High Churn: 10-15% less RAM - 32gb vs 28gb 20% less RAM after compaction 34gb vs 27gb No Churn: 20-30% less RAM - 23gb vs 18gb 40% less RAM after compaction 32.5gb vs 20gb Screenshots are in [this comment](https://github.com/prometheus/prometheus/pull/6679#issuecomment-621678932) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2020-05-06 08:30:00 -07:00
if err := head.Close(); err != nil {
return nil, err
}
w, err := wal.Open(db.logger, filepath.Join(db.dir, "wal"))
if err != nil {
return nil, err
}
var wbl *wal.WAL
wblDir := filepath.Join(db.dir, wal.WblDirName)
if _, err := os.Stat(wblDir); !os.IsNotExist(err) {
wbl, err = wal.Open(db.logger, wblDir)
if err != nil {
return nil, err
}
}
opts := DefaultHeadOptions()
opts.ChunkDirRoot = db.dir
head, err = NewHead(nil, db.logger, w, wbl, opts, NewHeadStats())
if err != nil {
return nil, err
}
// Set the min valid time for the ingested wal samples
// to be no lower than the maxt of the last block.
if err := head.Init(maxBlockTime); err != nil {
return nil, errors.Wrap(err, "read WAL")
}
// Set the wal to nil to disable all wal operations.
// This is mainly to avoid blocking when closing the head.
head.wal = nil
}
M-map full chunks of Head from disk (#6679) When appending to the head and a chunk is full it is flushed to the disk and m-mapped (memory mapped) to free up memory Prom startup now happens in these stages - Iterate the m-maped chunks from disk and keep a map of series reference to its slice of mmapped chunks. - Iterate the WAL as usual. Whenever we create a new series, look for it's mmapped chunks in the map created before and add it to that series. If a head chunk is corrupted the currpted one and all chunks after that are deleted and the data after the corruption is recovered from the existing WAL which means that a corruption in m-mapped files results in NO data loss. [Mmaped chunks format](https://github.com/prometheus/prometheus/blob/master/tsdb/docs/format/head_chunks.md) - main difference is that the chunk for mmaping now also includes series reference because there is no index for mapping series to chunks. [The block chunks](https://github.com/prometheus/prometheus/blob/master/tsdb/docs/format/chunks.md) are accessed from the index which includes the offsets for the chunks in the chunks file - example - chunks of series ID have offsets 200, 500 etc in the chunk files. In case of mmaped chunks, the offsets are stored in memory and accessed from that. During WAL replay, these offsets are restored by iterating all m-mapped chunks as stated above by matching the series id present in the chunk header and offset of that chunk in that file. **Prombench results** _WAL Replay_ 1h Wal reply time 30% less wal reply time - 4m31 vs 3m36 2h Wal reply time 20% less wal reply time - 8m16 vs 7m _Memory During WAL Replay_ High Churn: 10-15% less RAM - 32gb vs 28gb 20% less RAM after compaction 34gb vs 27gb No Churn: 20-30% less RAM - 23gb vs 18gb 40% less RAM after compaction 32.5gb vs 20gb Screenshots are in [this comment](https://github.com/prometheus/prometheus/pull/6679#issuecomment-621678932) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2020-05-06 08:30:00 -07:00
db.closers = append(db.closers, head)
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
return &DB{
dir: db.dir,
logger: db.logger,
blocks: blocks,
head: head,
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
}, nil
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
// Querier loads the blocks and wal and returns a new querier over the data partition for the given time range.
// Current implementation doesn't support multiple Queriers.
func (db *DBReadOnly) Querier(ctx context.Context, mint, maxt int64) (storage.Querier, error) {
q, err := db.loadDataAsQueryable(maxt)
if err != nil {
return nil, err
}
return q.Querier(ctx, mint, maxt)
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
// ChunkQuerier loads blocks and the wal and returns a new chunk querier over the data partition for the given time range.
// Current implementation doesn't support multiple ChunkQueriers.
func (db *DBReadOnly) ChunkQuerier(ctx context.Context, mint, maxt int64) (storage.ChunkQuerier, error) {
q, err := db.loadDataAsQueryable(maxt)
if err != nil {
return nil, err
}
return q.ChunkQuerier(ctx, mint, maxt)
}
// Blocks returns a slice of block readers for persisted blocks.
func (db *DBReadOnly) Blocks() ([]BlockReader, error) {
select {
case <-db.closed:
return nil, ErrClosed
default:
}
loadable, corrupted, err := openBlocks(db.logger, db.dir, nil, nil, nil)
if err != nil {
return nil, err
}
// Corrupted blocks that have been superseded by a loadable block can be safely ignored.
for _, block := range loadable {
for _, b := range block.Meta().Compaction.Parents {
delete(corrupted, b.ULID)
}
}
if len(corrupted) > 0 {
for _, b := range loadable {
if err := b.Close(); err != nil {
level.Warn(db.logger).Log("msg", "Closing block failed", "err", err, "block", b)
}
}
errs := tsdb_errors.NewMulti()
for ulid, err := range corrupted {
errs.Add(errors.Wrapf(err, "corrupted block %s", ulid.String()))
}
return nil, errs.Err()
}
if len(loadable) == 0 {
return nil, nil
}
sort.Slice(loadable, func(i, j int) bool {
return loadable[i].Meta().MinTime < loadable[j].Meta().MinTime
})
blockMetas := make([]BlockMeta, 0, len(loadable))
for _, b := range loadable {
blockMetas = append(blockMetas, b.Meta())
}
if overlaps := OverlappingBlocks(blockMetas); len(overlaps) > 0 {
level.Warn(db.logger).Log("msg", "Overlapping blocks found during opening", "detail", overlaps.String())
}
// Close all previously open readers and add the new ones to the cache.
for _, closer := range db.closers {
closer.Close()
}
blockClosers := make([]io.Closer, len(loadable))
blockReaders := make([]BlockReader, len(loadable))
for i, b := range loadable {
blockClosers[i] = b
blockReaders[i] = b
}
db.closers = blockClosers
return blockReaders, nil
}
// Close all block readers.
func (db *DBReadOnly) Close() error {
select {
case <-db.closed:
return ErrClosed
default:
}
close(db.closed)
return tsdb_errors.CloseAll(db.closers)
}
// Open returns a new DB in the given directory. If options are empty, DefaultOptions will be used.
React UI: Add Starting Screen (#8662) * Added walreplay API endpoint Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added starting page to react-ui Signed-off-by: Levi Harrison <git@leviharrison.dev> * Documented the new endpoint Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed typos Signed-off-by: Levi Harrison <git@leviharrison.dev> Co-authored-by: Julius Volz <julius.volz@gmail.com> * Removed logo Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed isResponding to isUnexpected Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed width of progress bar Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed width of progress bar Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added DB stats object Signed-off-by: Levi Harrison <git@leviharrison.dev> * Updated starting page to work with new fields Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 2) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 3) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (and also implementing a method this time) (pt. 4) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (and also implementing a method this time) (pt. 5) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed const to let Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 6) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Remove SetStats method Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added comma Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed api Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed to triple equals Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed data response types Signed-off-by: Levi Harrison <git@leviharrison.dev> * Don't return pointer Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed version Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed interface issue Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed pointer Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed copying lock value error Signed-off-by: Levi Harrison <git@leviharrison.dev> Co-authored-by: Julius Volz <julius.volz@gmail.com>
2021-06-05 07:29:32 -07:00
func Open(dir string, l log.Logger, r prometheus.Registerer, opts *Options, stats *DBStats) (db *DB, err error) {
var rngs []int64
opts, rngs = validateOpts(opts, nil)
React UI: Add Starting Screen (#8662) * Added walreplay API endpoint Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added starting page to react-ui Signed-off-by: Levi Harrison <git@leviharrison.dev> * Documented the new endpoint Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed typos Signed-off-by: Levi Harrison <git@leviharrison.dev> Co-authored-by: Julius Volz <julius.volz@gmail.com> * Removed logo Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed isResponding to isUnexpected Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed width of progress bar Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed width of progress bar Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added DB stats object Signed-off-by: Levi Harrison <git@leviharrison.dev> * Updated starting page to work with new fields Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 2) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 3) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (and also implementing a method this time) (pt. 4) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (and also implementing a method this time) (pt. 5) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed const to let Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 6) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Remove SetStats method Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added comma Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed api Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed to triple equals Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed data response types Signed-off-by: Levi Harrison <git@leviharrison.dev> * Don't return pointer Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed version Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed interface issue Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed pointer Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed copying lock value error Signed-off-by: Levi Harrison <git@leviharrison.dev> Co-authored-by: Julius Volz <julius.volz@gmail.com>
2021-06-05 07:29:32 -07:00
return open(dir, l, r, opts, rngs, stats)
}
func validateOpts(opts *Options, rngs []int64) (*Options, []int64) {
if opts == nil {
opts = DefaultOptions()
}
if opts.StripeSize <= 0 {
opts.StripeSize = DefaultStripeSize
}
if opts.HeadChunksWriteBufferSize <= 0 {
opts.HeadChunksWriteBufferSize = chunks.DefaultWriteBufferSize
}
if opts.HeadChunksEndTimeVariance <= 0 {
opts.HeadChunksEndTimeVariance = 0
}
Write m-map chunks in async via a queue while predicting the m-map chunk refs (#57) * write chunks via queue, predicting chunkrefs * fixes * linter * cleanup * better test coverage * deduplicate operations when cutting file * better comments * fix race * improvements based on PR feedback * comments * concurrent correctness test of write queue * linter * use isStarted flag in chunk write queue * separate mutex for isStarted * fixing tests * fix race in test * PR feedback * add license headers * PR feedback * pr feedback * dont recreate workerCtrl channel * address PR feedback in high concurrency read and write test * refactor the high concurrency write queue test * pr feedback * use require.Eventually * typo * Fixing comment Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com> * use buffered chan for chunk write queue * fix races * address feedback on PR * better comment * less type casts * dont reeimplement varint * move mtx above property it protects * improve tests by using wg instead of inspecting queue * add comment * add comment * writeChunkF comment * rename isStarted -> isRunning * prevent panic when double stopping * fix variable name in comment * delete outdated comment * naming and comment fixes in TestChunkWriteQueue_WrappingAroundSizeLimit * use require.False instead of require.Equal(t, false * always enable chunk write queue * dont call callback with lock held * undo rename of curFileSequence to curFileSeq * fix accidental change * fix comment * Better syntax Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com> * Better wording in comment Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com> * better comments to explain the use of coordinator chans in test * fix test which broke to the async writing of chunks * undo previous renaming of shadowing variable * rename var threadID to workerID * rename variables based on PR feedback * rename pos -> ts * better implementation of whileNotCanceled * update querySeriesRef before using it * rename labels -> lbls * initialize the chunk write queue operations metric with all possible labels * dont return error from CutNewFile * recreate chunk ref map regularly to free * limit how often we recreate the chunk ref map * fix typo in comment * better comment Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com>
2021-12-07 23:44:26 -08:00
if opts.HeadChunksWriteQueueSize < 0 {
opts.HeadChunksWriteQueueSize = chunks.DefaultWriteQueueSize
}
if opts.MaxBlockChunkSegmentSize <= 0 {
opts.MaxBlockChunkSegmentSize = chunks.DefaultChunkSegmentSize
}
if opts.MinBlockDuration <= 0 {
opts.MinBlockDuration = DefaultBlockDuration
}
if opts.MinBlockDuration > opts.MaxBlockDuration {
opts.MaxBlockDuration = opts.MinBlockDuration
}
if opts.OutOfOrderTimeWindow > 0 {
opts.AllowOverlappingQueries = true
}
if opts.OutOfOrderCapMin <= 0 {
opts.OutOfOrderCapMin = DefaultOutOfOrderCapMin
}
if opts.OutOfOrderCapMax <= 0 {
opts.OutOfOrderCapMax = DefaultOutOfOrderCapMax
}
if opts.OutOfOrderCapMin > opts.OutOfOrderCapMax {
opts.OutOfOrderCapMax = opts.OutOfOrderCapMin
}
if opts.OutOfOrderTimeWindow < 0 {
opts.OutOfOrderTimeWindow = 0
}
if len(rngs) == 0 {
// Start with smallest block duration and create exponential buckets until the exceed the
// configured maximum block duration.
rngs = ExponentialBlockRanges(opts.MinBlockDuration, 10, 3)
}
return opts, rngs
}
Add basic initial developer docs for TSDB (#9451) * Add basic initial developer docs for TSDB There's a decent amount of content already out there (blog posts, conference talks, etc), but: * when they get stale, they don't tend to get updated * they still leave me with questions that I'ld like to answer for developers (like me) who want to use, or work with, TSDB What I propose is developer docs inside the prometheus repository. Easy to find and harness the power of the community to expand it and keep it up to date. * perfect is the enemy of good. Let's have a base and incrementally improve * Markdown docs should be broad but not too deep. Source code comments can complement them, and are the ideal place for implementation details. Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * use example code that works out of the box Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * Apply suggestions from code review Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com> Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * PR feedback Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * more docs Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * PR feedback Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * Apply suggestions from code review Signed-off-by: Dieter Plaetinck <dieter@grafana.com> Co-authored-by: Bartlomiej Plotka <bwplotka@gmail.com> * Apply suggestions from code review Signed-off-by: Dieter Plaetinck <dieter@grafana.com> Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com> * feedback Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * Update tsdb/docs/usage.md Signed-off-by: Dieter Plaetinck <dieter@grafana.com> Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com> * final tweaks Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * workaround docs versioning issue Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * Move example code to real executable, testable example. Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * cleanup example test and make sure it always reproduces Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * obtain temp dir in a way that works with older Go versions Signed-off-by: Dieter Plaetinck <dieter@grafana.com> * Fix Ganesh's comments Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com> Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com> Co-authored-by: Bartlomiej Plotka <bwplotka@gmail.com> Co-authored-by: Ganesh Vernekar <ganeshvern@gmail.com>
2021-11-17 02:21:27 -08:00
// open returns a new DB in the given directory.
// It initializes the lockfile, WAL, compactor, and Head (by replaying the WAL), and runs the database.
// It is not safe to open more than one DB in the same directory.
React UI: Add Starting Screen (#8662) * Added walreplay API endpoint Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added starting page to react-ui Signed-off-by: Levi Harrison <git@leviharrison.dev> * Documented the new endpoint Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed typos Signed-off-by: Levi Harrison <git@leviharrison.dev> Co-authored-by: Julius Volz <julius.volz@gmail.com> * Removed logo Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed isResponding to isUnexpected Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed width of progress bar Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed width of progress bar Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added DB stats object Signed-off-by: Levi Harrison <git@leviharrison.dev> * Updated starting page to work with new fields Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 2) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 3) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (and also implementing a method this time) (pt. 4) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (and also implementing a method this time) (pt. 5) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed const to let Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 6) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Remove SetStats method Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added comma Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed api Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed to triple equals Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed data response types Signed-off-by: Levi Harrison <git@leviharrison.dev> * Don't return pointer Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed version Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed interface issue Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed pointer Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed copying lock value error Signed-off-by: Levi Harrison <git@leviharrison.dev> Co-authored-by: Julius Volz <julius.volz@gmail.com>
2021-06-05 07:29:32 -07:00
func open(dir string, l log.Logger, r prometheus.Registerer, opts *Options, rngs []int64, stats *DBStats) (_ *DB, returnedErr error) {
if err := os.MkdirAll(dir, 0o777); err != nil {
return nil, err
}
2017-02-19 07:04:37 -08:00
if l == nil {
l = log.NewNopLogger()
2017-02-19 07:04:37 -08:00
}
React UI: Add Starting Screen (#8662) * Added walreplay API endpoint Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added starting page to react-ui Signed-off-by: Levi Harrison <git@leviharrison.dev> * Documented the new endpoint Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed typos Signed-off-by: Levi Harrison <git@leviharrison.dev> Co-authored-by: Julius Volz <julius.volz@gmail.com> * Removed logo Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed isResponding to isUnexpected Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed width of progress bar Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed width of progress bar Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added DB stats object Signed-off-by: Levi Harrison <git@leviharrison.dev> * Updated starting page to work with new fields Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 2) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 3) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (and also implementing a method this time) (pt. 4) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (and also implementing a method this time) (pt. 5) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed const to let Signed-off-by: Levi Harrison <git@leviharrison.dev> * Passing nil (pt. 6) Signed-off-by: Levi Harrison <git@leviharrison.dev> * Remove SetStats method Signed-off-by: Levi Harrison <git@leviharrison.dev> * Added comma Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed api Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed to triple equals Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed data response types Signed-off-by: Levi Harrison <git@leviharrison.dev> * Don't return pointer Signed-off-by: Levi Harrison <git@leviharrison.dev> * Changed version Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed interface issue Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed pointer Signed-off-by: Levi Harrison <git@leviharrison.dev> * Fixed copying lock value error Signed-off-by: Levi Harrison <git@leviharrison.dev> Co-authored-by: Julius Volz <julius.volz@gmail.com>
2021-06-05 07:29:32 -07:00
if stats == nil {
stats = NewDBStats()
}
for i, v := range rngs {
if v > opts.MaxBlockDuration {
rngs = rngs[:i]
break
}
}
// Fixup bad format written by Prometheus 2.1.
2018-02-09 04:37:10 -08:00
if err := repairBadIndexVersion(l, dir); err != nil {
return nil, errors.Wrap(err, "repair bad index version")
2018-02-09 04:11:03 -08:00
}
walDir := filepath.Join(dir, "wal")
wblDir := filepath.Join(dir, wal.WblDirName)
// Migrate old WAL if one exists.
if err := MigrateWAL(l, walDir); err != nil {
return nil, errors.Wrap(err, "migrate WAL")
}
for _, tmpDir := range []string{walDir, dir} {
// Remove tmp dirs.
if err := removeBestEffortTmpDirs(l, tmpDir); err != nil {
return nil, errors.Wrap(err, "remove tmp dirs")
}
}
2017-01-17 21:18:32 -08:00
db := &DB{
dir: dir,
logger: l,
opts: opts,
compactc: make(chan struct{}, 1),
donec: make(chan struct{}),
stopc: make(chan struct{}),
autoCompact: true,
chunkPool: chunkenc.NewPool(),
blocksToDelete: opts.BlocksToDelete,
registerer: r,
}
defer func() {
// Close files if startup fails somewhere.
if returnedErr == nil {
return
}
close(db.donec) // DB is never run if it was an error, so close this channel here.
returnedErr = tsdb_errors.NewMulti(
returnedErr,
errors.Wrap(db.Close(), "close DB after failed startup"),
).Err()
}()
if db.blocksToDelete == nil {
db.blocksToDelete = DefaultBlocksToDelete(db)
}
var err error
db.locker, err = tsdbutil.NewDirLocker(dir, "tsdb", db.logger, r)
if err != nil {
return nil, err
}
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if !opts.NoLockfile {
if err := db.locker.Lock(); err != nil {
return nil, err
}
2017-05-09 03:52:47 -07:00
}
ctx, cancel := context.WithCancel(context.Background())
db.compactor, err = NewLeveledCompactorWithChunkSize(ctx, r, l, rngs, db.chunkPool, opts.MaxBlockChunkSegmentSize, nil, opts.AllowOverlappingCompaction)
if err != nil {
cancel()
return nil, errors.Wrap(err, "create leveled compactor")
}
db.compactCancel = cancel
var wlog, wblog *wal.WAL
segmentSize := wal.DefaultSegmentSize
// Wal is enabled.
if opts.WALSegmentSize >= 0 {
// Wal is set to a custom size.
if opts.WALSegmentSize > 0 {
segmentSize = opts.WALSegmentSize
}
wlog, err = wal.NewSize(l, r, walDir, segmentSize, opts.WALCompression)
if err != nil {
return nil, err
}
// Check if there is a WBL on disk, in which case we should replay that data.
wblSize, err := fileutil.DirSize(wblDir)
if err != nil && !os.IsNotExist(err) {
return nil, err
}
if opts.OutOfOrderTimeWindow > 0 || wblSize > 0 {
wblog, err = wal.NewSize(l, r, wblDir, segmentSize, opts.WALCompression)
if err != nil {
return nil, err
}
}
}
db.oooWasEnabled.Store(opts.OutOfOrderTimeWindow > 0)
headOpts := DefaultHeadOptions()
headOpts.ChunkRange = rngs[0]
headOpts.ChunkDirRoot = dir
headOpts.ChunkPool = db.chunkPool
headOpts.ChunkWriteBufferSize = opts.HeadChunksWriteBufferSize
headOpts.ChunkEndTimeVariance = opts.HeadChunksEndTimeVariance
Write m-map chunks in async via a queue while predicting the m-map chunk refs (#57) * write chunks via queue, predicting chunkrefs * fixes * linter * cleanup * better test coverage * deduplicate operations when cutting file * better comments * fix race * improvements based on PR feedback * comments * concurrent correctness test of write queue * linter * use isStarted flag in chunk write queue * separate mutex for isStarted * fixing tests * fix race in test * PR feedback * add license headers * PR feedback * pr feedback * dont recreate workerCtrl channel * address PR feedback in high concurrency read and write test * refactor the high concurrency write queue test * pr feedback * use require.Eventually * typo * Fixing comment Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com> * use buffered chan for chunk write queue * fix races * address feedback on PR * better comment * less type casts * dont reeimplement varint * move mtx above property it protects * improve tests by using wg instead of inspecting queue * add comment * add comment * writeChunkF comment * rename isStarted -> isRunning * prevent panic when double stopping * fix variable name in comment * delete outdated comment * naming and comment fixes in TestChunkWriteQueue_WrappingAroundSizeLimit * use require.False instead of require.Equal(t, false * always enable chunk write queue * dont call callback with lock held * undo rename of curFileSequence to curFileSeq * fix accidental change * fix comment * Better syntax Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com> * Better wording in comment Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com> * better comments to explain the use of coordinator chans in test * fix test which broke to the async writing of chunks * undo previous renaming of shadowing variable * rename var threadID to workerID * rename variables based on PR feedback * rename pos -> ts * better implementation of whileNotCanceled * update querySeriesRef before using it * rename labels -> lbls * initialize the chunk write queue operations metric with all possible labels * dont return error from CutNewFile * recreate chunk ref map regularly to free * limit how often we recreate the chunk ref map * fix typo in comment * better comment Co-authored-by: Peter Štibraný <peter.stibrany@grafana.com>
2021-12-07 23:44:26 -08:00
headOpts.ChunkWriteQueueSize = opts.HeadChunksWriteQueueSize
headOpts.StripeSize = opts.StripeSize
headOpts.SeriesCallback = opts.SeriesLifecycleCallback
headOpts.EnableExemplarStorage = opts.EnableExemplarStorage
headOpts.MaxExemplars.Store(opts.MaxExemplars)
headOpts.EnableMemorySnapshotOnShutdown = opts.EnableMemorySnapshotOnShutdown
headOpts.OutOfOrderTimeWindow.Store(opts.OutOfOrderTimeWindow)
headOpts.OutOfOrderCapMin.Store(opts.OutOfOrderCapMin)
headOpts.OutOfOrderCapMax.Store(opts.OutOfOrderCapMax)
headOpts.NewChunkDiskMapper = opts.NewChunkDiskMapper
if opts.IsolationDisabled {
// We only override this flag if isolation is disabled at DB level. We use the default otherwise.
headOpts.IsolationDisabled = opts.IsolationDisabled
}
db.head, err = NewHead(r, l, wlog, wblog, headOpts, stats.Head)
if err != nil {
return nil, err
2017-08-30 08:38:25 -07:00
}
// Register metrics after assigning the head block.
db.metrics = newDBMetrics(db, r)
maxBytes := opts.MaxBytes
if maxBytes < 0 {
maxBytes = 0
}
db.metrics.maxBytes.Set(float64(maxBytes))
if err := db.reload(); err != nil {
return nil, err
}
// Set the min valid time for the ingested samples
// to be no lower than the maxt of the last block.
minValidTime := int64(math.MinInt64)
// We do not consider blocks created from out-of-order samples for Head's minValidTime
// since minValidTime is only for the in-order data and we do not want to discard unnecessary
// samples from the Head.
inOrderMaxTime, ok := db.inOrderBlocksMaxTime()
if ok {
minValidTime = inOrderMaxTime
}
if initErr := db.head.Init(minValidTime); initErr != nil {
db.head.metrics.walCorruptionsTotal.Inc()
isOOOErr := isErrLoadOOOWal(initErr)
if isOOOErr {
level.Warn(db.logger).Log("msg", "Encountered OOO WAL read error, attempting repair", "err", initErr)
if err := wblog.Repair(initErr); err != nil {
return nil, errors.Wrap(err, "repair corrupted OOO WAL")
}
} else {
level.Warn(db.logger).Log("msg", "Encountered WAL read error, attempting repair", "err", initErr)
if err := wlog.Repair(initErr); err != nil {
return nil, errors.Wrap(err, "repair corrupted WAL")
}
}
}
go db.run()
return db, nil
}
func removeBestEffortTmpDirs(l log.Logger, dir string) error {
files, err := os.ReadDir(dir)
if os.IsNotExist(err) {
return nil
}
if err != nil {
return err
}
for _, f := range files {
if isTmpDir(f) {
if err := os.RemoveAll(filepath.Join(dir, f.Name())); err != nil {
level.Error(l).Log("msg", "failed to delete tmp block dir", "dir", filepath.Join(dir, f.Name()), "err", err)
continue
}
level.Info(l).Log("msg", "Found and deleted tmp block dir", "dir", filepath.Join(dir, f.Name()))
}
}
return nil
}
// StartTime implements the Storage interface.
func (db *DB) StartTime() (int64, error) {
db.mtx.RLock()
defer db.mtx.RUnlock()
if len(db.blocks) > 0 {
return db.blocks[0].Meta().MinTime, nil
}
return db.head.MinTime(), nil
}
2017-06-08 03:14:13 -07:00
// Dir returns the directory of the database.
func (db *DB) Dir() string {
return db.dir
}
func (db *DB) run() {
defer close(db.donec)
backoff := time.Duration(0)
for {
select {
case <-db.stopc:
return
case <-time.After(backoff):
}
select {
case <-time.After(1 * time.Minute):
db.cmtx.Lock()
if err := db.reloadBlocks(); err != nil {
level.Error(db.logger).Log("msg", "reloadBlocks", "err", err)
}
db.cmtx.Unlock()
select {
case db.compactc <- struct{}{}:
default:
}
case <-db.compactc:
db.metrics.compactionsTriggered.Inc()
db.autoCompactMtx.Lock()
if db.autoCompact {
if err := db.Compact(); err != nil {
level.Error(db.logger).Log("msg", "compaction failed", "err", err)
backoff = exponential(backoff, 1*time.Second, 1*time.Minute)
} else {
backoff = 0
}
} else {
db.metrics.compactionsSkipped.Inc()
}
db.autoCompactMtx.Unlock()
case <-db.stopc:
return
}
}
}
// Appender opens a new appender against the database.
func (db *DB) Appender(ctx context.Context) storage.Appender {
return dbAppender{db: db, Appender: db.head.Appender(ctx)}
}
// ApplyConfig applies a new config to the DB.
// Behaviour of 'OutOfOrderTimeWindow' is as follows:
// OOO enabled = oooTimeWindow > 0. OOO disabled = oooTimeWindow is 0.
// 1) Before: OOO disabled, Now: OOO enabled =>
// * A new WBL is created for the head block.
// * OOO compaction is enabled.
// * Overlapping queries are enabled.
// 2) Before: OOO enabled, Now: OOO enabled =>
// * Only the time window is updated.
// 3) Before: OOO enabled, Now: OOO disabled =>
// * Time Window set to 0. So no new OOO samples will be allowed.
// * OOO WBL will stay and follow the usual cleanup until a restart.
// * OOO Compaction and overlapping queries will remain enabled until a restart.
// 4) Before: OOO disabled, Now: OOO disabled => no-op.
func (db *DB) ApplyConfig(conf *config.Config) error {
oooTimeWindow := int64(0)
if conf.StorageConfig.TSDBConfig != nil {
oooTimeWindow = conf.StorageConfig.TSDBConfig.OutOfOrderTimeWindow
}
if oooTimeWindow < 0 {
oooTimeWindow = 0
}
// Create WBL if it was not present and if OOO is enabled with WAL enabled.
var wblog *wal.WAL
var err error
if db.head.wbl != nil {
// The existing WBL from the disk might have been replayed while OOO was disabled.
wblog = db.head.wbl
} else if !db.oooWasEnabled.Load() && oooTimeWindow > 0 && db.opts.WALSegmentSize >= 0 {
segmentSize := wal.DefaultSegmentSize
// Wal is set to a custom size.
if db.opts.WALSegmentSize > 0 {
segmentSize = db.opts.WALSegmentSize
}
oooWalDir := filepath.Join(db.dir, wal.WblDirName)
wblog, err = wal.NewSize(db.logger, db.registerer, oooWalDir, segmentSize, db.opts.WALCompression)
if err != nil {
return err
}
}
db.opts.OutOfOrderTimeWindow = oooTimeWindow
db.head.ApplyConfig(conf, wblog)
if !db.oooWasEnabled.Load() {
db.oooWasEnabled.Store(oooTimeWindow > 0)
}
return nil
}
// dbAppender wraps the DB's head appender and triggers compactions on commit
// if necessary.
type dbAppender struct {
storage.Appender
db *DB
}
var _ storage.GetRef = dbAppender{}
func (a dbAppender) GetRef(lset labels.Labels) (storage.SeriesRef, labels.Labels) {
if g, ok := a.Appender.(storage.GetRef); ok {
return g.GetRef(lset)
}
return 0, nil
}
func (a dbAppender) Commit() error {
err := a.Appender.Commit()
2017-09-04 06:07:30 -07:00
// We could just run this check every few minutes practically. But for benchmarks
// and high frequency use cases this is the safer way.
if a.db.head.compactable() {
select {
case a.db.compactc <- struct{}{}:
default:
}
}
return err
}
// Compact data if possible. After successful compaction blocks are reloaded
// which will also delete the blocks that fall out of the retention window.
// Old blocks are only deleted on reloadBlocks based on the new block's parent information.
// See DB.reloadBlocks documentation for further information.
func (db *DB) Compact() (returnErr error) {
db.cmtx.Lock()
defer db.cmtx.Unlock()
defer func() {
if returnErr != nil && !errors.Is(returnErr, context.Canceled) {
// If we got an error because context was canceled then we're most likely
// shutting down TSDB and we don't need to report this on metrics
db.metrics.compactionsFailed.Inc()
}
}()
lastBlockMaxt := int64(math.MinInt64)
defer func() {
returnErr = tsdb_errors.NewMulti(
returnErr,
errors.Wrap(db.head.truncateWAL(lastBlockMaxt), "WAL truncation in Compact defer"),
).Err()
}()
start := time.Now()
// Check whether we have pending head blocks that are ready to be persisted.
// They have the highest priority.
for {
select {
case <-db.stopc:
return nil
default:
}
if !db.head.compactable() {
break
}
mint := db.head.MinTime()
maxt := rangeForTimestamp(mint, db.head.chunkRange.Load())
// Wrap head into a range that bounds all reads to it.
// We remove 1 millisecond from maxt because block
// intervals are half-open: [b.MinTime, b.MaxTime). But
// chunk intervals are closed: [c.MinTime, c.MaxTime];
// so in order to make sure that overlaps are evaluated
// consistently, we explicitly remove the last value
// from the block interval here.
// TODO(jesus.vazquez) Once we have the OOORangeHead we need to update
// TODO(jesus.vazquez) this method to accept a second parameter with an OOORangeHead to
// TODO(jesus.vazquez) compact the OOO Samples.
if err := db.compactHead(NewRangeHead(db.head, mint, maxt-1)); err != nil {
return errors.Wrap(err, "compact head")
}
// Consider only successful compactions for WAL truncation.
lastBlockMaxt = maxt
}
// Clear some disk space before compacting blocks, especially important
// when Head compaction happened over a long time range.
if err := db.head.truncateWAL(lastBlockMaxt); err != nil {
return errors.Wrap(err, "WAL truncation in Compact")
}
2017-08-09 02:10:29 -07:00
compactionDuration := time.Since(start)
if compactionDuration.Milliseconds() > db.head.chunkRange.Load() {
level.Warn(db.logger).Log(
"msg", "Head compaction took longer than the block time range, compactions are falling behind and won't be able to catch up",
"duration", compactionDuration.String(),
"block_range", db.head.chunkRange.Load(),
)
}
if lastBlockMaxt != math.MinInt64 {
// The head was compacted, so we compact OOO head as well.
if err := db.compactOOOHead(); err != nil {
return errors.Wrap(err, "compact ooo head")
}
}
return db.compactBlocks()
}
// CompactHead compacts the given RangeHead.
func (db *DB) CompactHead(head *RangeHead) error {
db.cmtx.Lock()
defer db.cmtx.Unlock()
if err := db.compactHead(head); err != nil {
return errors.Wrap(err, "compact head")
}
if err := db.head.truncateWAL(head.BlockMaxTime()); err != nil {
return errors.Wrap(err, "WAL truncation")
}
return nil
}
// CompactOOOHead compacts the OOO Head.
func (db *DB) CompactOOOHead() error {
db.cmtx.Lock()
defer db.cmtx.Unlock()
return db.compactOOOHead()
}
func (db *DB) compactOOOHead() error {
if !db.oooWasEnabled.Load() {
return nil
}
oooHead, err := NewOOOCompactionHead(db.head)
if err != nil {
return errors.Wrap(err, "get ooo compaction head")
}
ulids, err := db.compactor.CompactOOO(db.dir, oooHead)
if err != nil {
return errors.Wrap(err, "compact ooo head")
}
if err := db.reloadBlocks(); err != nil {
errs := tsdb_errors.NewMulti(err)
for _, uid := range ulids {
if errRemoveAll := os.RemoveAll(filepath.Join(db.dir, uid.String())); errRemoveAll != nil {
errs.Add(errRemoveAll)
}
}
return errors.Wrap(errs.Err(), "reloadBlocks blocks after failed compact ooo head")
}
lastWBLFile, minOOOMmapRef := oooHead.LastWBLFile(), oooHead.LastMmapRef()
if lastWBLFile != 0 || minOOOMmapRef != 0 {
if err := db.head.truncateOOO(lastWBLFile, minOOOMmapRef); err != nil {
return errors.Wrap(err, "truncate ooo wbl")
}
}
return nil
}
// compactHead compacts the given RangeHead.
// The compaction mutex should be held before calling this method.
func (db *DB) compactHead(head *RangeHead) error {
uid, err := db.compactor.Write(db.dir, head, head.MinTime(), head.BlockMaxTime(), nil)
if err != nil {
return errors.Wrap(err, "persist head block")
}
if err := db.reloadBlocks(); err != nil {
if errRemoveAll := os.RemoveAll(filepath.Join(db.dir, uid.String())); errRemoveAll != nil {
return tsdb_errors.NewMulti(
errors.Wrap(err, "reloadBlocks blocks"),
errors.Wrapf(errRemoveAll, "delete persisted head block after failed db reloadBlocks:%s", uid),
).Err()
2017-08-09 02:10:29 -07:00
}
return errors.Wrap(err, "reloadBlocks blocks")
}
if err = db.head.truncateMemory(head.BlockMaxTime()); err != nil {
return errors.Wrap(err, "head memory truncate")
}
return nil
}
// compactBlocks compacts all the eligible on-disk blocks.
// The compaction mutex should be held before calling this method.
func (db *DB) compactBlocks() (err error) {
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// Check for compactions of multiple blocks.
for {
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plan, err := db.compactor.Plan(db.dir)
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if err != nil {
return errors.Wrap(err, "plan compaction")
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}
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if len(plan) == 0 {
break
}
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select {
case <-db.stopc:
return nil
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default:
}
uid, err := db.compactor.Compact(db.dir, plan, db.blocks)
if err != nil {
return errors.Wrapf(err, "compact %s", plan)
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}
if err := db.reloadBlocks(); err != nil {
if err := os.RemoveAll(filepath.Join(db.dir, uid.String())); err != nil {
return errors.Wrapf(err, "delete compacted block after failed db reloadBlocks:%s", uid)
}
return errors.Wrap(err, "reloadBlocks blocks")
}
}
return nil
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}
// getBlock iterates a given block range to find a block by a given id.
// If found it returns the block itself and a boolean to indicate that it was found.
func getBlock(allBlocks []*Block, id ulid.ULID) (*Block, bool) {
for _, b := range allBlocks {
if b.Meta().ULID == id {
return b, true
}
}
return nil, false
}
// reload reloads blocks and truncates the head and its WAL.
func (db *DB) reload() error {
if err := db.reloadBlocks(); err != nil {
return errors.Wrap(err, "reloadBlocks")
}
maxt, ok := db.inOrderBlocksMaxTime()
if !ok {
return nil
}
if err := db.head.Truncate(maxt); err != nil {
return errors.Wrap(err, "head truncate")
}
return nil
}
// reloadBlocks reloads blocks without touching head.
// Blocks that are obsolete due to replacement or retention will be deleted.
func (db *DB) reloadBlocks() (err error) {
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defer func() {
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if err != nil {
db.metrics.reloadsFailed.Inc()
}
db.metrics.reloads.Inc()
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}()
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// Now that we reload TSDB every minute, there is high chance for race condition with a reload
// triggered by CleanTombstones(). We need to lock the reload to avoid the situation where
// a normal reload and CleanTombstones try to delete the same block.
db.mtx.Lock()
defer db.mtx.Unlock()
loadable, corrupted, err := openBlocks(db.logger, db.dir, db.blocks, db.chunkPool, db.opts.SeriesHashCache)
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if err != nil {
return err
}
deletableULIDs := db.blocksToDelete(loadable)
deletable := make(map[ulid.ULID]*Block, len(deletableULIDs))
// Mark all parents of loaded blocks as deletable (no matter if they exists). This makes it resilient against the process
// crashing towards the end of a compaction but before deletions. By doing that, we can pick up the deletion where it left off during a crash.
for _, block := range loadable {
if _, ok := deletableULIDs[block.meta.ULID]; ok {
deletable[block.meta.ULID] = block
}
for _, b := range block.Meta().Compaction.Parents {
if _, ok := corrupted[b.ULID]; ok {
delete(corrupted, b.ULID)
level.Warn(db.logger).Log("msg", "Found corrupted block, but replaced by compacted one so it's safe to delete. This should not happen with atomic deletes.", "block", b.ULID)
}
deletable[b.ULID] = nil
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}
}
if len(corrupted) > 0 {
// Corrupted but no child loaded for it.
// Close all new blocks to release the lock for windows.
for _, block := range loadable {
if _, open := getBlock(db.blocks, block.Meta().ULID); !open {
block.Close()
}
}
errs := tsdb_errors.NewMulti()
for ulid, err := range corrupted {
errs.Add(errors.Wrapf(err, "corrupted block %s", ulid.String()))
}
return errs.Err()
}
var (
toLoad []*Block
blocksSize int64
)
// All deletable blocks should be unloaded.
// NOTE: We need to loop through loadable one more time as there might be loadable ready to be removed (replaced by compacted block).
for _, block := range loadable {
if _, ok := deletable[block.Meta().ULID]; ok {
deletable[block.Meta().ULID] = block
continue
}
toLoad = append(toLoad, block)
blocksSize += block.Size()
}
db.metrics.blocksBytes.Set(float64(blocksSize))
sort.Slice(toLoad, func(i, j int) bool {
return toLoad[i].Meta().MinTime < toLoad[j].Meta().MinTime
})
if !db.AllowOverlappingQueries() {
if err := validateBlockSequence(toLoad); err != nil {
return errors.Wrap(err, "invalid block sequence")
}
}
// Swap new blocks first for subsequently created readers to be seen.
oldBlocks := db.blocks
db.blocks = toLoad
blockMetas := make([]BlockMeta, 0, len(toLoad))
for _, b := range toLoad {
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
blockMetas = append(blockMetas, b.Meta())
}
if overlaps := OverlappingBlocks(blockMetas); len(overlaps) > 0 {
level.Debug(db.logger).Log("msg", "Overlapping blocks found during reloadBlocks", "detail", overlaps.String())
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
}
// Append blocks to old, deletable blocks, so we can close them.
for _, b := range oldBlocks {
if _, ok := deletable[b.Meta().ULID]; ok {
deletable[b.Meta().ULID] = b
}
}
if err := db.deleteBlocks(deletable); err != nil {
return errors.Wrapf(err, "delete %v blocks", len(deletable))
}
return nil
}
func (db *DB) AllowOverlappingQueries() bool {
return db.opts.AllowOverlappingQueries || db.oooWasEnabled.Load()
}
func openBlocks(l log.Logger, dir string, loaded []*Block, chunkPool chunkenc.Pool, cache *hashcache.SeriesHashCache) (blocks []*Block, corrupted map[ulid.ULID]error, err error) {
bDirs, err := blockDirs(dir)
if err != nil {
return nil, nil, errors.Wrap(err, "find blocks")
}
corrupted = make(map[ulid.ULID]error)
for _, bDir := range bDirs {
meta, _, err := readMetaFile(bDir)
if err != nil {
level.Error(l).Log("msg", "Failed to read meta.json for a block during reloadBlocks. Skipping", "dir", bDir, "err", err)
continue
}
// See if we already have the block in memory or open it otherwise.
block, open := getBlock(loaded, meta.ULID)
if !open {
var cacheProvider index.ReaderCacheProvider
if cache != nil {
cacheProvider = cache.GetBlockCacheProvider(meta.ULID.String())
}
block, err = OpenBlockWithCache(l, bDir, chunkPool, cacheProvider)
if err != nil {
corrupted[meta.ULID] = err
continue
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}
}
blocks = append(blocks, block)
2016-12-09 01:00:14 -08:00
}
return blocks, corrupted, nil
}
// DefaultBlocksToDelete returns a filter which decides time based and size based
// retention from the options of the db.
func DefaultBlocksToDelete(db *DB) BlocksToDeleteFunc {
return func(blocks []*Block) map[ulid.ULID]struct{} {
return deletableBlocks(db, blocks)
}
}
// deletableBlocks returns all currently loaded blocks past retention policy or already compacted into a new block.
func deletableBlocks(db *DB, blocks []*Block) map[ulid.ULID]struct{} {
deletable := make(map[ulid.ULID]struct{})
// Sort the blocks by time - newest to oldest (largest to smallest timestamp).
// This ensures that the retentions will remove the oldest blocks.
sort.Slice(blocks, func(i, j int) bool {
return blocks[i].Meta().MaxTime > blocks[j].Meta().MaxTime
})
for _, block := range blocks {
if block.Meta().Compaction.Deletable {
deletable[block.Meta().ULID] = struct{}{}
}
}
for ulid := range BeyondTimeRetention(db, blocks) {
deletable[ulid] = struct{}{}
}
for ulid := range BeyondSizeRetention(db, blocks) {
deletable[ulid] = struct{}{}
}
return deletable
}
// BeyondTimeRetention returns those blocks which are beyond the time retention
// set in the db options.
func BeyondTimeRetention(db *DB, blocks []*Block) (deletable map[ulid.ULID]struct{}) {
// Time retention is disabled or no blocks to work with.
if len(blocks) == 0 || db.opts.RetentionDuration == 0 {
return
}
deletable = make(map[ulid.ULID]struct{})
for i, block := range blocks {
// The difference between the first block and this block is larger than
Spelling (#6517) * spelling: alertmanager Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: attributes Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: autocomplete Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: bootstrap Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: caught Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: chunkenc Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: compaction Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: corrupted Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: deletable Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: expected Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: fine-grained Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: initialized Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: iteration Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: javascript Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: multiple Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: number Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: overlapping Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: possible Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: postings Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: procedure Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: programmatic Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: queuing Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: querier Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: repairing Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: received Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: reproducible Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: retention Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: sample Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: segements Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: semantic Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: software [LICENSE] Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: staging Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: timestamp Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: unfortunately Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: uvarint Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: subsequently Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: ressamples Signed-off-by: Josh Soref <jsoref@users.noreply.github.com>
2020-01-02 06:54:09 -08:00
// the retention period so any blocks after that are added as deletable.
if i > 0 && blocks[0].Meta().MaxTime-block.Meta().MaxTime > db.opts.RetentionDuration {
for _, b := range blocks[i:] {
deletable[b.meta.ULID] = struct{}{}
}
db.metrics.timeRetentionCount.Inc()
break
}
}
Spelling (#6517) * spelling: alertmanager Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: attributes Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: autocomplete Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: bootstrap Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: caught Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: chunkenc Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: compaction Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: corrupted Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: deletable Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: expected Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: fine-grained Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: initialized Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: iteration Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: javascript Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: multiple Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: number Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: overlapping Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: possible Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: postings Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: procedure Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: programmatic Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: queuing Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: querier Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: repairing Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: received Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: reproducible Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: retention Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: sample Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: segements Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: semantic Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: software [LICENSE] Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: staging Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: timestamp Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: unfortunately Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: uvarint Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: subsequently Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: ressamples Signed-off-by: Josh Soref <jsoref@users.noreply.github.com>
2020-01-02 06:54:09 -08:00
return deletable
}
// BeyondSizeRetention returns those blocks which are beyond the size retention
// set in the db options.
func BeyondSizeRetention(db *DB, blocks []*Block) (deletable map[ulid.ULID]struct{}) {
// Size retention is disabled or no blocks to work with.
if len(blocks) == 0 || db.opts.MaxBytes <= 0 {
return
}
deletable = make(map[ulid.ULID]struct{})
M-map full chunks of Head from disk (#6679) When appending to the head and a chunk is full it is flushed to the disk and m-mapped (memory mapped) to free up memory Prom startup now happens in these stages - Iterate the m-maped chunks from disk and keep a map of series reference to its slice of mmapped chunks. - Iterate the WAL as usual. Whenever we create a new series, look for it's mmapped chunks in the map created before and add it to that series. If a head chunk is corrupted the currpted one and all chunks after that are deleted and the data after the corruption is recovered from the existing WAL which means that a corruption in m-mapped files results in NO data loss. [Mmaped chunks format](https://github.com/prometheus/prometheus/blob/master/tsdb/docs/format/head_chunks.md) - main difference is that the chunk for mmaping now also includes series reference because there is no index for mapping series to chunks. [The block chunks](https://github.com/prometheus/prometheus/blob/master/tsdb/docs/format/chunks.md) are accessed from the index which includes the offsets for the chunks in the chunks file - example - chunks of series ID have offsets 200, 500 etc in the chunk files. In case of mmaped chunks, the offsets are stored in memory and accessed from that. During WAL replay, these offsets are restored by iterating all m-mapped chunks as stated above by matching the series id present in the chunk header and offset of that chunk in that file. **Prombench results** _WAL Replay_ 1h Wal reply time 30% less wal reply time - 4m31 vs 3m36 2h Wal reply time 20% less wal reply time - 8m16 vs 7m _Memory During WAL Replay_ High Churn: 10-15% less RAM - 32gb vs 28gb 20% less RAM after compaction 34gb vs 27gb No Churn: 20-30% less RAM - 23gb vs 18gb 40% less RAM after compaction 32.5gb vs 20gb Screenshots are in [this comment](https://github.com/prometheus/prometheus/pull/6679#issuecomment-621678932) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2020-05-06 08:30:00 -07:00
// Initializing size counter with WAL size and Head chunks
// written to disk, as that is part of the retention strategy.
blocksSize := db.Head().Size()
for i, block := range blocks {
blocksSize += block.Size()
if blocksSize > int64(db.opts.MaxBytes) {
// Add this and all following blocks for deletion.
for _, b := range blocks[i:] {
deletable[b.meta.ULID] = struct{}{}
}
db.metrics.sizeRetentionCount.Inc()
break
}
}
Spelling (#6517) * spelling: alertmanager Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: attributes Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: autocomplete Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: bootstrap Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: caught Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: chunkenc Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: compaction Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: corrupted Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: deletable Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: expected Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: fine-grained Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: initialized Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: iteration Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: javascript Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: multiple Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: number Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: overlapping Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: possible Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: postings Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: procedure Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: programmatic Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: queuing Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: querier Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: repairing Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: received Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: reproducible Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: retention Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: sample Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: segements Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: semantic Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: software [LICENSE] Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: staging Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: timestamp Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: unfortunately Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: uvarint Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: subsequently Signed-off-by: Josh Soref <jsoref@users.noreply.github.com> * spelling: ressamples Signed-off-by: Josh Soref <jsoref@users.noreply.github.com>
2020-01-02 06:54:09 -08:00
return deletable
}
// deleteBlocks closes the block if loaded and deletes blocks from the disk if exists.
// When the map contains a non nil block object it means it is loaded in memory
// so needs to be closed first as it might need to wait for pending readers to complete.
func (db *DB) deleteBlocks(blocks map[ulid.ULID]*Block) error {
for ulid, block := range blocks {
if block != nil {
if err := block.Close(); err != nil {
level.Warn(db.logger).Log("msg", "Closing block failed", "err", err, "block", ulid)
}
}
toDelete := filepath.Join(db.dir, ulid.String())
if _, err := os.Stat(toDelete); os.IsNotExist(err) {
// Noop.
continue
} else if err != nil {
return errors.Wrapf(err, "stat dir %v", toDelete)
}
// Replace atomically to avoid partial block when process would crash during deletion.
tmpToDelete := filepath.Join(db.dir, fmt.Sprintf("%s%s", ulid, tmpForDeletionBlockDirSuffix))
if err := fileutil.Replace(toDelete, tmpToDelete); err != nil {
return errors.Wrapf(err, "replace of obsolete block for deletion %s", ulid)
}
if err := os.RemoveAll(tmpToDelete); err != nil {
return errors.Wrapf(err, "delete obsolete block %s", ulid)
}
level.Info(db.logger).Log("msg", "Deleting obsolete block", "block", ulid)
}
return nil
}
2017-01-03 06:43:26 -08:00
// validateBlockSequence returns error if given block meta files indicate that some blocks overlaps within sequence.
func validateBlockSequence(bs []*Block) error {
if len(bs) <= 1 {
return nil
}
var metas []BlockMeta
for _, b := range bs {
metas = append(metas, b.meta)
}
overlaps := OverlappingBlocks(metas)
if len(overlaps) > 0 {
return errors.Errorf("block time ranges overlap: %s", overlaps)
}
return nil
}
// TimeRange specifies minTime and maxTime range.
type TimeRange struct {
Min, Max int64
}
// Overlaps contains overlapping blocks aggregated by overlapping range.
type Overlaps map[TimeRange][]BlockMeta
// String returns human readable string form of overlapped blocks.
func (o Overlaps) String() string {
var res []string
for r, overlaps := range o {
var groups []string
for _, m := range overlaps {
groups = append(groups, fmt.Sprintf(
"<ulid: %s, mint: %d, maxt: %d, range: %s>",
m.ULID.String(),
m.MinTime,
m.MaxTime,
(time.Duration((m.MaxTime-m.MinTime)/1000)*time.Second).String(),
))
}
res = append(res, fmt.Sprintf(
"[mint: %d, maxt: %d, range: %s, blocks: %d]: %s",
r.Min, r.Max,
(time.Duration((r.Max-r.Min)/1000)*time.Second).String(),
len(overlaps),
strings.Join(groups, ", ")),
)
}
return strings.Join(res, "\n")
}
// OverlappingBlocks returns all overlapping blocks from given meta files.
func OverlappingBlocks(bm []BlockMeta) Overlaps {
if len(bm) <= 1 {
return nil
}
var (
overlaps [][]BlockMeta
// pending contains not ended blocks in regards to "current" timestamp.
pending = []BlockMeta{bm[0]}
// continuousPending helps to aggregate same overlaps to single group.
continuousPending = true
)
// We have here blocks sorted by minTime. We iterate over each block and treat its minTime as our "current" timestamp.
// We check if any of the pending block finished (blocks that we have seen before, but their maxTime was still ahead current
// timestamp). If not, it means they overlap with our current block. In the same time current block is assumed pending.
for _, b := range bm[1:] {
var newPending []BlockMeta
for _, p := range pending {
// "b.MinTime" is our current time.
if b.MinTime >= p.MaxTime {
continuousPending = false
continue
}
// "p" overlaps with "b" and "p" is still pending.
newPending = append(newPending, p)
}
// Our block "b" is now pending.
pending = append(newPending, b)
if len(newPending) == 0 {
// No overlaps.
continue
}
if continuousPending && len(overlaps) > 0 {
overlaps[len(overlaps)-1] = append(overlaps[len(overlaps)-1], b)
continue
}
overlaps = append(overlaps, append(newPending, b))
// Start new pendings.
continuousPending = true
}
// Fetch the critical overlapped time range foreach overlap groups.
overlapGroups := Overlaps{}
for _, overlap := range overlaps {
minRange := TimeRange{Min: 0, Max: math.MaxInt64}
for _, b := range overlap {
if minRange.Max > b.MaxTime {
minRange.Max = b.MaxTime
}
if minRange.Min < b.MinTime {
minRange.Min = b.MinTime
}
}
overlapGroups[minRange] = overlap
}
return overlapGroups
2017-01-02 13:24:35 -08:00
}
func (db *DB) String() string {
return "HEAD"
}
// Blocks returns the databases persisted blocks.
func (db *DB) Blocks() []*Block {
db.mtx.RLock()
defer db.mtx.RUnlock()
return db.blocks
}
// inOrderBlocksMaxTime returns the max time among the blocks that were not totally created
// out of out-of-order data. If the returned boolean is true, it means there is at least
// one such block.
func (db *DB) inOrderBlocksMaxTime() (maxt int64, ok bool) {
maxt, ok, hasOOO := int64(math.MinInt64), false, false
// If blocks are overlapping, last block might not have the max time. So check all blocks.
for _, b := range db.Blocks() {
hasOOO = hasOOO || b.meta.OutOfOrder
if !b.meta.OutOfOrder && b.meta.MaxTime > maxt {
ok = true
maxt = b.meta.MaxTime
}
}
return maxt, ok
}
// Head returns the databases's head.
func (db *DB) Head() *Head {
return db.head
}
2017-01-05 23:08:02 -08:00
// Close the partition.
func (db *DB) Close() error {
close(db.stopc)
if db.compactCancel != nil {
db.compactCancel()
}
<-db.donec
db.mtx.Lock()
defer db.mtx.Unlock()
var g errgroup.Group
// blocks also contains all head blocks.
for _, pb := range db.blocks {
g.Go(pb.Close)
2016-12-14 23:31:26 -08:00
}
errs := tsdb_errors.NewMulti(g.Wait(), db.locker.Release())
if db.head != nil {
errs.Add(db.head.Close())
}
return errs.Err()
2016-12-09 01:00:14 -08:00
}
// DisableCompactions disables auto compactions.
func (db *DB) DisableCompactions() {
db.autoCompactMtx.Lock()
defer db.autoCompactMtx.Unlock()
db.autoCompact = false
level.Info(db.logger).Log("msg", "Compactions disabled")
}
// EnableCompactions enables auto compactions.
func (db *DB) EnableCompactions() {
db.autoCompactMtx.Lock()
defer db.autoCompactMtx.Unlock()
db.autoCompact = true
level.Info(db.logger).Log("msg", "Compactions enabled")
}
2018-02-28 03:04:55 -08:00
// Snapshot writes the current data to the directory. If withHead is set to true it
// will create a new block containing all data that's currently in the memory buffer/WAL.
func (db *DB) Snapshot(dir string, withHead bool) error {
if dir == db.dir {
return errors.Errorf("cannot snapshot into base directory")
}
if _, err := ulid.ParseStrict(dir); err == nil {
return errors.Errorf("dir must not be a valid ULID")
}
db.cmtx.Lock()
defer db.cmtx.Unlock()
db.mtx.RLock()
defer db.mtx.RUnlock()
for _, b := range db.blocks {
level.Info(db.logger).Log("msg", "Snapshotting block", "block", b)
if err := b.Snapshot(dir); err != nil {
return errors.Wrapf(err, "error snapshotting block: %s", b.Dir())
}
}
2018-02-28 03:04:55 -08:00
if !withHead {
return nil
}
mint := db.head.MinTime()
maxt := db.head.MaxTime()
head := NewRangeHead(db.head, mint, maxt)
// Add +1 millisecond to block maxt because block intervals are half-open: [b.MinTime, b.MaxTime).
// Because of this block intervals are always +1 than the total samples it includes.
if _, err := db.compactor.Write(dir, head, mint, maxt+1, nil); err != nil {
return errors.Wrap(err, "snapshot head block")
}
return nil
}
2017-07-14 00:00:22 -07:00
// Querier returns a new querier over the data partition for the given time range.
func (db *DB) Querier(_ context.Context, mint, maxt int64) (storage.Querier, error) {
var blocks []BlockReader
db.mtx.RLock()
defer db.mtx.RUnlock()
for _, b := range db.blocks {
if b.OverlapsClosedInterval(mint, maxt) {
blocks = append(blocks, b)
}
}
var inOrderHeadQuerier storage.Querier
if maxt >= db.head.MinTime() {
rh := NewRangeHead(db.head, mint, maxt)
var err error
inOrderHeadQuerier, err = NewBlockQuerier(rh, mint, maxt)
if err != nil {
return nil, errors.Wrapf(err, "open block querier for head %s", rh)
}
// Getting the querier above registers itself in the queue that the truncation waits on.
// So if the querier is currently not colliding with any truncation, we can continue to use it and still
// won't run into a race later since any truncation that comes after will wait on this querier if it overlaps.
shouldClose, getNew, newMint := db.head.IsQuerierCollidingWithTruncation(mint, maxt)
if shouldClose {
if err := inOrderHeadQuerier.Close(); err != nil {
return nil, errors.Wrapf(err, "closing head block querier %s", rh)
}
inOrderHeadQuerier = nil
}
if getNew {
rh := NewRangeHead(db.head, newMint, maxt)
inOrderHeadQuerier, err = NewBlockQuerier(rh, newMint, maxt)
if err != nil {
return nil, errors.Wrapf(err, "open block querier for head while getting new querier %s", rh)
}
}
}
var outOfOrderHeadQuerier storage.Querier
if overlapsClosedInterval(mint, maxt, db.head.MinOOOTime(), db.head.MaxOOOTime()) {
rh := NewOOORangeHead(db.head, mint, maxt)
var err error
outOfOrderHeadQuerier, err = NewBlockQuerier(rh, mint, maxt)
if err != nil {
return nil, errors.Wrapf(err, "open block querier for ooo head %s", rh)
}
}
blockQueriers := make([]storage.Querier, 0, len(blocks))
for _, b := range blocks {
q, err := NewBlockQuerier(b, mint, maxt)
if err == nil {
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
blockQueriers = append(blockQueriers, q)
continue
}
// If we fail, all previously opened queriers must be closed.
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
for _, q := range blockQueriers {
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
// TODO(bwplotka): Handle error.
_ = q.Close()
}
return nil, errors.Wrapf(err, "open querier for block %s", b)
}
if inOrderHeadQuerier != nil {
blockQueriers = append(blockQueriers, inOrderHeadQuerier)
}
if outOfOrderHeadQuerier != nil {
blockQueriers = append(blockQueriers, outOfOrderHeadQuerier)
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
return storage.NewMergeQuerier(blockQueriers, nil, storage.ChainedSeriesMerge), nil
}
// blockQueriersForRange returns individual block chunk queriers from the persistent blocks, in-order head block, and the
// out-of-order head block, overlapping with the given time range.
func (db *DB) blockChunkQuerierForRange(mint, maxt int64) ([]storage.ChunkQuerier, error) {
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
var blocks []BlockReader
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
db.mtx.RLock()
defer db.mtx.RUnlock()
for _, b := range db.blocks {
if b.OverlapsClosedInterval(mint, maxt) {
blocks = append(blocks, b)
}
}
var inOrderHeadQuerier storage.ChunkQuerier
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
if maxt >= db.head.MinTime() {
rh := NewRangeHead(db.head, mint, maxt)
var err error
inOrderHeadQuerier, err = NewBlockChunkQuerier(rh, mint, maxt)
if err != nil {
return nil, errors.Wrapf(err, "open querier for head %s", rh)
}
// Getting the querier above registers itself in the queue that the truncation waits on.
// So if the querier is currently not colliding with any truncation, we can continue to use it and still
// won't run into a race later since any truncation that comes after will wait on this querier if it overlaps.
shouldClose, getNew, newMint := db.head.IsQuerierCollidingWithTruncation(mint, maxt)
if shouldClose {
if err := inOrderHeadQuerier.Close(); err != nil {
return nil, errors.Wrapf(err, "closing head querier %s", rh)
}
inOrderHeadQuerier = nil
}
if getNew {
rh := NewRangeHead(db.head, newMint, maxt)
inOrderHeadQuerier, err = NewBlockChunkQuerier(rh, newMint, maxt)
if err != nil {
return nil, errors.Wrapf(err, "open querier for head while getting new querier %s", rh)
}
}
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
}
var outOfOrderHeadQuerier storage.ChunkQuerier
if overlapsClosedInterval(mint, maxt, db.head.MinOOOTime(), db.head.MaxOOOTime()) {
rh := NewOOORangeHead(db.head, mint, maxt)
var err error
outOfOrderHeadQuerier, err = NewBlockChunkQuerier(rh, mint, maxt)
if err != nil {
return nil, errors.Wrapf(err, "open block chunk querier for ooo head %s", rh)
}
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
blockQueriers := make([]storage.ChunkQuerier, 0, len(blocks))
for _, b := range blocks {
q, err := NewBlockChunkQuerier(b, mint, maxt)
if err == nil {
blockQueriers = append(blockQueriers, q)
continue
}
// If we fail, all previously opened queriers must be closed.
for _, q := range blockQueriers {
// TODO(bwplotka): Handle error.
_ = q.Close()
}
return nil, errors.Wrapf(err, "open querier for block %s", b)
}
if inOrderHeadQuerier != nil {
blockQueriers = append(blockQueriers, inOrderHeadQuerier)
}
if outOfOrderHeadQuerier != nil {
blockQueriers = append(blockQueriers, outOfOrderHeadQuerier)
}
return blockQueriers, nil
}
// ChunkQuerier returns a new chunk querier over the data partition for the given time range.
func (db *DB) ChunkQuerier(_ context.Context, mint, maxt int64) (storage.ChunkQuerier, error) {
blockQueriers, err := db.blockChunkQuerierForRange(mint, maxt)
if err != nil {
return nil, err
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
return storage.NewMergeChunkQuerier(blockQueriers, nil, storage.NewCompactingChunkSeriesMerger(storage.ChainedSeriesMerge)), nil
}
// UnorderedChunkQuerier returns a new chunk querier over the data partition for the given time range.
// The chunks can be overlapping and not sorted.
func (db *DB) UnorderedChunkQuerier(_ context.Context, mint, maxt int64) (storage.ChunkQuerier, error) {
blockQueriers, err := db.blockChunkQuerierForRange(mint, maxt)
if err != nil {
return nil, err
}
return storage.NewMergeChunkQuerier(blockQueriers, nil, storage.NewConcatenatingChunkSeriesMerger()), nil
}
func (db *DB) ExemplarQuerier(ctx context.Context) (storage.ExemplarQuerier, error) {
return db.head.exemplars.ExemplarQuerier(ctx)
}
func rangeForTimestamp(t, width int64) (maxt int64) {
return (t/width)*width + width
}
// Delete implements deletion of metrics. It only has atomicity guarantees on a per-block basis.
func (db *DB) Delete(mint, maxt int64, ms ...*labels.Matcher) error {
db.cmtx.Lock()
defer db.cmtx.Unlock()
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var g errgroup.Group
db.mtx.RLock()
defer db.mtx.RUnlock()
for _, b := range db.blocks {
if b.OverlapsClosedInterval(mint, maxt) {
g.Go(func(b *Block) func() error {
return func() error { return b.Delete(mint, maxt, ms...) }
}(b))
}
}
if db.head.OverlapsClosedInterval(mint, maxt) {
g.Go(func() error {
return db.head.Delete(mint, maxt, ms...)
})
}
return g.Wait()
}
// CleanTombstones re-writes any blocks with tombstones.
func (db *DB) CleanTombstones() (err error) {
db.cmtx.Lock()
defer db.cmtx.Unlock()
start := time.Now()
defer db.metrics.tombCleanTimer.Observe(time.Since(start).Seconds())
cleanUpCompleted := false
// Repeat cleanup until there is no tombstones left.
for !cleanUpCompleted {
cleanUpCompleted = true
for _, pb := range db.Blocks() {
uid, safeToDelete, cleanErr := pb.CleanTombstones(db.Dir(), db.compactor)
if cleanErr != nil {
return errors.Wrapf(cleanErr, "clean tombstones: %s", pb.Dir())
}
if !safeToDelete {
// There was nothing to clean.
continue
}
// In case tombstones of the old block covers the whole block,
// then there would be no resultant block to tell the parent.
// The lock protects against race conditions when deleting blocks
// during an already running reload.
db.mtx.Lock()
pb.meta.Compaction.Deletable = safeToDelete
db.mtx.Unlock()
cleanUpCompleted = false
if err = db.reloadBlocks(); err == nil { // Will try to delete old block.
// Successful reload will change the existing blocks.
// We need to loop over the new set of blocks.
break
}
// Delete new block if it was created.
if uid != nil && *uid != (ulid.ULID{}) {
dir := filepath.Join(db.Dir(), uid.String())
if err := os.RemoveAll(dir); err != nil {
level.Error(db.logger).Log("msg", "failed to delete block after failed `CleanTombstones`", "dir", dir, "err", err)
}
}
return errors.Wrap(err, "reload blocks")
}
}
return nil
}
func isBlockDir(fi fs.DirEntry) bool {
if !fi.IsDir() {
return false
}
_, err := ulid.ParseStrict(fi.Name())
return err == nil
}
// isTmpDir returns true if the given file-info contains a block ULID or checkpoint prefix and a tmp extension.
func isTmpDir(fi fs.DirEntry) bool {
if !fi.IsDir() {
return false
}
fn := fi.Name()
ext := filepath.Ext(fn)
if ext == tmpForDeletionBlockDirSuffix || ext == tmpForCreationBlockDirSuffix || ext == tmpLegacy {
if strings.HasPrefix(fn, "checkpoint.") {
return true
}
if _, err := ulid.ParseStrict(fn[:len(fn)-len(ext)]); err == nil {
return true
}
}
return false
}
func blockDirs(dir string) ([]string, error) {
files, err := os.ReadDir(dir)
if err != nil {
return nil, err
}
var dirs []string
for _, f := range files {
if isBlockDir(f) {
dirs = append(dirs, filepath.Join(dir, f.Name()))
}
}
return dirs, nil
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}
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func sequenceFiles(dir string) ([]string, error) {
files, err := os.ReadDir(dir)
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if err != nil {
return nil, err
}
var res []string
for _, fi := range files {
if _, err := strconv.ParseUint(fi.Name(), 10, 64); err != nil {
continue
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}
res = append(res, filepath.Join(dir, fi.Name()))
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}
return res, nil
}
func nextSequenceFile(dir string) (string, int, error) {
files, err := os.ReadDir(dir)
if err != nil {
return "", 0, err
}
i := uint64(0)
for _, f := range files {
j, err := strconv.ParseUint(f.Name(), 10, 64)
if err != nil {
continue
}
i = j
}
return filepath.Join(dir, fmt.Sprintf("%0.6d", i+1)), int(i + 1), nil
}
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func exponential(d, min, max time.Duration) time.Duration {
d *= 2
if d < min {
d = min
}
if d > max {
d = max
}
return d
}