prometheus/tsdb/tsdbutil/buffer.go

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// Copyright 2018 The Prometheus Authors
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
package tsdbutil
import (
"math"
Style cleanup of all the changes in sparsehistogram so far A lot of this code was hacked together, literally during a hackathon. This commit intends not to change the code substantially, but just make the code obey the usual style practices. A (possibly incomplete) list of areas: * Generally address linter warnings. * The `pgk` directory is deprecated as per dev-summit. No new packages should be added to it. I moved the new `pkg/histogram` package to `model` anticipating what's proposed in #9478. * Make the naming of the Sparse Histogram more consistent. Including abbreviations, there were just too many names for it: SparseHistogram, Histogram, Histo, hist, his, shs, h. The idea is to call it "Histogram" in general. Only add "Sparse" if it is needed to avoid confusion with conventional Histograms (which is rare because the TSDB really has no notion of conventional Histograms). Use abbreviations only in local scope, and then really abbreviate (not just removing three out of seven letters like in "Histo"). This is in the spirit of https://github.com/golang/go/wiki/CodeReviewComments#variable-names * Several other minor name changes. * A lot of formatting of doc comments. For one, following https://github.com/golang/go/wiki/CodeReviewComments#comment-sentences , but also layout question, anticipating how things will look like when rendered by `godoc` (even where `godoc` doesn't render them right now because they are for unexported types or not a doc comment at all but just a normal code comment - consistency is queen!). * Re-enabled `TestQueryLog` and `TestEndopints` (they pass now, leaving them disabled was presumably an oversight). * Bucket iterator for histogram.Histogram is now created with a method. * HistogramChunk.iterator now allows iterator recycling. (I think @dieterbe only commented it out because he was confused by the question in the comment.) * HistogramAppender.Append panics now because we decided to treat staleness marker differently. Signed-off-by: beorn7 <beorn@grafana.com>
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"github.com/prometheus/prometheus/model/histogram"
storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation. (#7005) * storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation. ## Rationales: In many places (e.g. chunk Remote read, Thanos Receive fetching chunk from TSDB), we operate on encoded chunks not samples. This means that we unnecessary decode/encode, wasting CPU, time and memory. This PR adds chunk iterator interfaces and makes the merge code to be reused between both seriesSets I will make the use of it in following PR inside tsdb itself. For now fanout implements it and mergers. All merges now also allows passing series mergers. This opens doors for custom deduplications other than TSDB vertical ones (e.g. offline one we have in Thanos). ## Changes * Added Chunk versions of all iterating methods. It all starts in Querier/ChunkQuerier. The plan is that Storage will implement both chunked and samples. * Added Seek to chunks.Iterator interface for iterating over chunks. * NewMergeChunkQuerier was added; Both this and NewMergeQuerier are now using generigMergeQuerier to share the code. Generic code was added. * Improved tests. * Added some TODO for further simplifications in next PRs. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed Brian's comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Moved s/Labeled/SeriesLabels as per Krasi suggestion. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed Krasi's comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Second iteration of Krasi comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Another round of comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
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"github.com/prometheus/prometheus/tsdb/chunkenc"
)
// BufferedSeriesIterator wraps an iterator with a look-back buffer.
type BufferedSeriesIterator struct {
storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation. (#7005) * storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation. ## Rationales: In many places (e.g. chunk Remote read, Thanos Receive fetching chunk from TSDB), we operate on encoded chunks not samples. This means that we unnecessary decode/encode, wasting CPU, time and memory. This PR adds chunk iterator interfaces and makes the merge code to be reused between both seriesSets I will make the use of it in following PR inside tsdb itself. For now fanout implements it and mergers. All merges now also allows passing series mergers. This opens doors for custom deduplications other than TSDB vertical ones (e.g. offline one we have in Thanos). ## Changes * Added Chunk versions of all iterating methods. It all starts in Querier/ChunkQuerier. The plan is that Storage will implement both chunked and samples. * Added Seek to chunks.Iterator interface for iterating over chunks. * NewMergeChunkQuerier was added; Both this and NewMergeQuerier are now using generigMergeQuerier to share the code. Generic code was added. * Improved tests. * Added some TODO for further simplifications in next PRs. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed Brian's comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Moved s/Labeled/SeriesLabels as per Krasi suggestion. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed Krasi's comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Second iteration of Krasi comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Another round of comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
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it chunkenc.Iterator
buf *sampleRing
lastTime int64
}
// NewBuffer returns a new iterator that buffers the values within the time range
// of the current element and the duration of delta before.
storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation. (#7005) * storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation. ## Rationales: In many places (e.g. chunk Remote read, Thanos Receive fetching chunk from TSDB), we operate on encoded chunks not samples. This means that we unnecessary decode/encode, wasting CPU, time and memory. This PR adds chunk iterator interfaces and makes the merge code to be reused between both seriesSets I will make the use of it in following PR inside tsdb itself. For now fanout implements it and mergers. All merges now also allows passing series mergers. This opens doors for custom deduplications other than TSDB vertical ones (e.g. offline one we have in Thanos). ## Changes * Added Chunk versions of all iterating methods. It all starts in Querier/ChunkQuerier. The plan is that Storage will implement both chunked and samples. * Added Seek to chunks.Iterator interface for iterating over chunks. * NewMergeChunkQuerier was added; Both this and NewMergeQuerier are now using generigMergeQuerier to share the code. Generic code was added. * Improved tests. * Added some TODO for further simplifications in next PRs. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed Brian's comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Moved s/Labeled/SeriesLabels as per Krasi suggestion. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed Krasi's comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Second iteration of Krasi comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Another round of comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
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func NewBuffer(it chunkenc.Iterator, delta int64) *BufferedSeriesIterator {
return &BufferedSeriesIterator{
it: it,
buf: newSampleRing(delta, 16),
lastTime: math.MinInt64,
}
}
// PeekBack returns the previous element of the iterator. If there is none buffered,
// ok is false.
func (b *BufferedSeriesIterator) PeekBack() (t int64, v float64, ok bool) {
return b.buf.last()
}
// Buffer returns an iterator over the buffered data.
storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation. (#7005) * storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation. ## Rationales: In many places (e.g. chunk Remote read, Thanos Receive fetching chunk from TSDB), we operate on encoded chunks not samples. This means that we unnecessary decode/encode, wasting CPU, time and memory. This PR adds chunk iterator interfaces and makes the merge code to be reused between both seriesSets I will make the use of it in following PR inside tsdb itself. For now fanout implements it and mergers. All merges now also allows passing series mergers. This opens doors for custom deduplications other than TSDB vertical ones (e.g. offline one we have in Thanos). ## Changes * Added Chunk versions of all iterating methods. It all starts in Querier/ChunkQuerier. The plan is that Storage will implement both chunked and samples. * Added Seek to chunks.Iterator interface for iterating over chunks. * NewMergeChunkQuerier was added; Both this and NewMergeQuerier are now using generigMergeQuerier to share the code. Generic code was added. * Improved tests. * Added some TODO for further simplifications in next PRs. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed Brian's comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Moved s/Labeled/SeriesLabels as per Krasi suggestion. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed Krasi's comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Second iteration of Krasi comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Another round of comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
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func (b *BufferedSeriesIterator) Buffer() chunkenc.Iterator {
return b.buf.iterator()
}
// Seek advances the iterator to the element at time t or greater.
func (b *BufferedSeriesIterator) Seek(t int64) bool {
t0 := t - b.buf.delta
// If the delta would cause us to seek backwards, preserve the buffer
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// and just continue regular advancement while filling the buffer on the way.
if t0 > b.lastTime {
b.buf.reset()
ok := b.it.Seek(t0)
if !ok {
return false
}
b.lastTime, _ = b.At()
}
if b.lastTime >= t {
return true
}
for b.Next() {
if b.lastTime >= t {
return true
}
}
return false
}
// Next advances the iterator to the next element.
func (b *BufferedSeriesIterator) Next() bool {
// Add current element to buffer before advancing.
b.buf.add(b.it.At())
ok := b.it.Next()
if ok {
b.lastTime, _ = b.At()
}
return ok
}
// At returns the current element of the iterator.
func (b *BufferedSeriesIterator) At() (int64, float64) {
return b.it.At()
}
// Err returns the last encountered error.
func (b *BufferedSeriesIterator) Err() error {
return b.it.Err()
}
type sample struct {
t int64
v float64
h *histogram.Histogram
}
func (s sample) T() int64 {
return s.t
}
func (s sample) V() float64 {
return s.v
}
func (s sample) H() *histogram.Histogram {
return s.h
}
type sampleRing struct {
delta int64
buf []sample // lookback buffer
i int // position of most recent element in ring buffer
f int // position of first element in ring buffer
l int // number of elements in buffer
}
func newSampleRing(delta int64, sz int) *sampleRing {
r := &sampleRing{delta: delta, buf: make([]sample, sz)}
r.reset()
return r
}
func (r *sampleRing) reset() {
r.l = 0
r.i = -1
r.f = 0
}
storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation. (#7005) * storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation. ## Rationales: In many places (e.g. chunk Remote read, Thanos Receive fetching chunk from TSDB), we operate on encoded chunks not samples. This means that we unnecessary decode/encode, wasting CPU, time and memory. This PR adds chunk iterator interfaces and makes the merge code to be reused between both seriesSets I will make the use of it in following PR inside tsdb itself. For now fanout implements it and mergers. All merges now also allows passing series mergers. This opens doors for custom deduplications other than TSDB vertical ones (e.g. offline one we have in Thanos). ## Changes * Added Chunk versions of all iterating methods. It all starts in Querier/ChunkQuerier. The plan is that Storage will implement both chunked and samples. * Added Seek to chunks.Iterator interface for iterating over chunks. * NewMergeChunkQuerier was added; Both this and NewMergeQuerier are now using generigMergeQuerier to share the code. Generic code was added. * Improved tests. * Added some TODO for further simplifications in next PRs. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed Brian's comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Moved s/Labeled/SeriesLabels as per Krasi suggestion. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed Krasi's comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Second iteration of Krasi comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Another round of comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
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func (r *sampleRing) iterator() chunkenc.Iterator {
return &sampleRingIterator{r: r, i: -1}
}
type sampleRingIterator struct {
r *sampleRing
i int
}
func (it *sampleRingIterator) Next() bool {
it.i++
return it.i < it.r.l
}
func (it *sampleRingIterator) Seek(int64) bool {
return false
}
func (it *sampleRingIterator) Err() error {
return nil
}
func (it *sampleRingIterator) At() (int64, float64) {
return it.r.at(it.i)
}
func (it *sampleRingIterator) AtHistogram() (int64, *histogram.Histogram) {
// TODO(beorn7): Add proper histogram support.
return 0, nil
}
func (it *sampleRingIterator) ChunkEncoding() chunkenc.Encoding {
return chunkenc.EncXOR
}
func (r *sampleRing) at(i int) (int64, float64) {
j := (r.f + i) % len(r.buf)
s := r.buf[j]
return s.t, s.v
}
// add adds a sample to the ring buffer and frees all samples that fall
// out of the delta range.
func (r *sampleRing) add(t int64, v float64) {
l := len(r.buf)
// Grow the ring buffer if it fits no more elements.
if l == r.l {
buf := make([]sample, 2*l)
copy(buf[l+r.f:], r.buf[r.f:])
copy(buf, r.buf[:r.f])
r.buf = buf
r.i = r.f
r.f += l
} else {
r.i++
if r.i >= l {
r.i -= l
}
}
r.buf[r.i] = sample{t: t, v: v}
r.l++
// Free head of the buffer of samples that just fell out of the range.
for r.buf[r.f].t < t-r.delta {
r.f++
if r.f >= l {
r.f -= l
}
r.l--
}
}
// last returns the most recent element added to the ring.
func (r *sampleRing) last() (int64, float64, bool) {
if r.l == 0 {
return 0, 0, false
}
s := r.buf[r.i]
return s.t, s.v, true
}
func (r *sampleRing) samples() []sample {
res := make([]sample, r.l)
k := r.f + r.l
var j int
if k > len(r.buf) {
k = len(r.buf)
j = r.l - k + r.f
}
n := copy(res, r.buf[r.f:k])
copy(res[n:], r.buf[:j])
return res
}