Optimize histogram iterators
Histogram iterators allocate new objects in the AtHistogram and
AtFloatHistogram methods, which makes calculating rates over long
ranges expensive.
In #13215 we allowed an existing object to be reused
when converting an integer histogram to a float histogram. This commit follows
the same idea and allows injecting an existing object in the AtHistogram and
AtFloatHistogram methods. When the injected value is nil, iterators allocate
new histograms, otherwise they populate and return the injected object.
The commit also adds a CopyTo method to Histogram and FloatHistogram which
is used in the BufferedIterator to overwrite items in the ring instead of making
new copies.
Note that a specialized HPoint pool is needed for all of this to work
(`matrixSelectorHPool`).
---------
Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
Co-authored-by: George Krajcsovits <krajorama@users.noreply.github.com>
The ChunkReader interface's Chunk() has been changed to ChunkOrIterable().
This is a precursor to OOO native histogram support - with OOO native histograms, the chunks.Meta passed to Chunk() can result in multiple chunks being returned rather than just a single chunk (e.g. if oooMergedChunk has a counter reset in the middle).
To support this, ChunkOrIterable() requires either a single chunk or an iterable to be returned. If an iterable is returned, the caller has the responsibility of converting the samples from the iterable into possibly multiple chunks. The OOOHeadChunkReader now returns an iterable rather than a chunk to prepare for the native histograms case. Also as a beneficial side effect, oooMergedChunk and boundedChunk has been simplified as they only need to implement the Iterable interface now, not the full Chunk interface.
---------
Signed-off-by: Fiona Liao <fiona.y.liao@gmail.com>
Co-authored-by: George Krajcsovits <krajorama@users.noreply.github.com>
Add a chunk size limit in bytes
This creates a hard cap for XOR chunks of 1024 bytes.
The limit for histogram chunk is also 1024 bytes, but it is a soft limit as a histogram has a dynamic size, and even a single one could be larger than 1024 bytes.
This also avoids cutting new histogram chunks if the existing chunk has fewer than 10 histograms yet. In that way, we are accepting "jumbo chunks" in order to have at least 10 histograms in a chunk, allowing compression to kick in.
Signed-off-by: Justin Lei <justin.lei@grafana.com>
Currently memSeries holds a single head chunk in-memory and a slice of mmapped chunks.
When append() is called on memSeries it might decide that a new headChunk is needed to use for given append() call.
If that happens it will first mmap existing head chunk and only after that happens it will create a new empty headChunk and continue appending
our sample to it.
Since appending samples uses write lock on memSeries no other read or write can happen until any append is completed.
When we have an append() that must create a new head chunk the whole memSeries is blocked until mmapping of existing head chunk finishes.
Mmapping itself uses a lock as it needs to be serialised, which means that the more chunks to mmap we have the longer each chunk might wait
for it to be mmapped.
If there's enough chunks that require mmapping some memSeries will be locked for long enough that it will start affecting
queries and scrapes.
Queries might timeout, since by default they have a 2 minute timeout set.
Scrapes will be blocked inside append() call, which means there will be a gap between samples. This will first affect range queries
or calls using rate() and such, since the time range requested in the query might have too few samples to calculate anything.
To avoid this we need to remove mmapping from append path, since mmapping is blocking.
But this means that when we cut a new head chunk we need to keep the old one around, so we can mmap it later.
This change makes memSeries.headChunk a linked list, memSeries.headChunk still points to the 'open' head chunk that receives new samples,
while older, yet to be mmapped, chunks are linked to it.
Mmapping is done on a schedule by iterating all memSeries one by one. Thanks to this we control when mmapping is done, since we trigger
it manually, which reduces the risk that it will have to compete for mmap locks with other chunks.
Signed-off-by: Łukasz Mierzwa <l.mierzwa@gmail.com>
Wiser coders than myself have come to the conclusion that a `switch`
statement is almost always superior to a statement that includes any
`else if`.
The exceptions that I have found in our codebase are just these two:
* The `if else` is followed by an additional statement before the next
condition (separated by a `;`).
* The whole thing is within a `for` loop and `break` statements are
used. In this case, using `switch` would require tagging the `for`
loop, which probably tips the balance.
Why are `switch` statements more readable?
For one, fewer curly braces. But more importantly, the conditions all
have the same alignment, so the whole thing follows the natural flow
of going down a list of conditions. With `else if`, in contrast, all
conditions but the first are "hidden" behind `} else if `, harder to
spot and (for no good reason) presented differently from the first
condition.
I'm sure the aforemention wise coders can list even more reasons.
In any case, I like it so much that I have found myself recommending
it in code reviews. I would like to make it a habit in our code base,
without making it a hard requirement that we would test on the CI. But
for that, there has to be a role model, so this commit eliminates all
`if else` occurrences, unless it is autogenerated code or fits one of
the exceptions above.
Signed-off-by: beorn7 <beorn@grafana.com>
We haven't updated golint-ci in our CI yet, but this commit prepares
for that.
There are a lot of new warnings, and it is mostly because the "revive"
linter got updated. I agree with most of the new warnings, mostly
around not naming unused function parameters (although it is justified
in some cases for documentation purposes – while things like mocks are
a good example where not naming the parameter is clearer).
I'm pretty upset about the "empty block" warning to include `for`
loops. It's such a common pattern to do something in the head of the
`for` loop and then have an empty block. There is still an open issue
about this: https://github.com/mgechev/revive/issues/810 I have
disabled "revive" altogether in files where empty blocks are used
excessively, and I have made the effort to add individual
`// nolint:revive` where empty blocks are used just once or twice.
It's borderline noisy, though, but let's go with it for now.
I should mention that none of the "empty block" warnings for `for`
loop bodies were legitimate.
Signed-off-by: beorn7 <beorn@grafana.com>
Use new experimental package `golang.org/x/exp/slices`.
slices.Sort works on values that are directly comparable, like ints,
so avoids the overhad of an interface call to `.Less()`.
Left tests unchanged, because they don't need the speed and it may be
a cross-check that slices.Sort gives the same answer.
Signed-off-by: Bryan Boreham <bjboreham@gmail.com>
* Introduce out-of-order TSDB support
This implementation is based on this design doc:
https://docs.google.com/document/d/1Kppm7qL9C-BJB1j6yb6-9ObG3AbdZnFUBYPNNWwDBYM/edit?usp=sharing
This commit adds support to accept out-of-order ("OOO") sample into the TSDB
up to a configurable time allowance. If OOO is enabled, overlapping querying
are automatically enabled.
Most of the additions have been borrowed from
https://github.com/grafana/mimir-prometheus/
Here is the list ist of the original commits cherry picked
from mimir-prometheus into this branch:
- 4b2198d7ec
- 2836e5513f
- 00b379c3a5
- ff0dc75758
- a632c73352
- c6f3d4ab33
- 5e8406a1d4
- abde1e0ba1
- e70e769889
- df59320886
Co-authored-by: Jesus Vazquez <jesus.vazquez@grafana.com>
Co-authored-by: Ganesh Vernekar <ganeshvern@gmail.com>
Co-authored-by: Dieter Plaetinck <dieter@grafana.com>
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* gofumpt files
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Add license header to missing files
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix OOO tests due to existing chunk disk mapper implementation
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix truncate int overflow
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Add Sync method to the WAL and update tests
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* remove useless sync
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Update minOOOTime after truncating Head
* Update minOOOTime after truncating Head
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Fix lint
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Add a unit test
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Load OutOfOrderTimeWindow only once per appender
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix OOO Head LabelValues and PostingsForMatchers
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix replay of OOO mmap chunks
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Remove unnecessary err check
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Prevent panic with ApplyConfig
Signed-off-by: Ganesh Vernekar 15064823+codesome@users.noreply.github.com
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Run OOO compaction after restart if there is OOO data from WBL
Signed-off-by: Ganesh Vernekar 15064823+codesome@users.noreply.github.com
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Apply Bartek's suggestions
Co-authored-by: Bartlomiej Plotka <bwplotka@gmail.com>
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Refactor OOO compaction
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Address comments and TODOs
- Added a comment explaining why we need the allow overlapping
compaction toggle
- Clarified TSDBConfig OutOfOrderTimeWindow doc
- Added an owner to all the TODOs in the code
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Run go format
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix remaining review comments
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Fix tests
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Change wbl reference when truncating ooo in TestHeadMinOOOTimeUpdate
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix TestWBLAndMmapReplay test failure on windows
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Address most of the feedback
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Refactor the block meta for out of order
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Fix windows error
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Fix review comments
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
Signed-off-by: Ganesh Vernekar 15064823+codesome@users.noreply.github.com
Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com>
Co-authored-by: Ganesh Vernekar <ganeshvern@gmail.com>
Co-authored-by: Dieter Plaetinck <dieter@grafana.com>
Co-authored-by: Oleg Zaytsev <mail@olegzaytsev.com>
Co-authored-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Update go to 1.19, set min version to 1.18
Signed-off-by: Julien Pivotto <roidelapluie@o11y.eu>
* Update golangci-lint
Signed-off-by: Julien Pivotto <roidelapluie@o11y.eu>
Signed-off-by: Julien Pivotto <roidelapluie@o11y.eu>
* Job queue
This PR reimplements chan chunkWriteJob with custom buffered queue that should use less memory, because it doesn't preallocate entire buffer for maximum queue size at once. Instead it allocates individual "segments" with smaller size.
As elements are added to the queue, they fill individual segments. When elements are removed from the queue (and segments), empty segments can be thrown away. This doesn't change memory usage of the queue when it's full, but should decrease its memory footprint when it's empty (queue will keep max 1 segment in such case).
Signed-off-by: Peter Štibraný <pstibrany@gmail.com>
* Modify test to work with low resolution timer.
Signed-off-by: Peter Štibraný <pstibrany@gmail.com>
* Improve comments.
Signed-off-by: Peter Štibraný <pstibrany@gmail.com>
* dont waste space on the chunkRefMap
* add time factor
* add comments
* better readability
* add instrumentation and more comments
* formatting
* uppercase comments
* Address review feedback. Renamed "free" to "shrink" everywhere, updated comments and threshold to 1000.
* double space
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
Co-authored-by: Peter Štibraný <pstibrany@gmail.com>
Co-authored-by: Mauro Stettler <mauro.stettler@gmail.com>
Instead of creating a new hashing object every time, call `crc32.Checksum`
which computes the answer without allocations.
Signed-off-by: Bryan Boreham <bjboreham@gmail.com>
* refactor: move from io/ioutil to io and os packages
* use fs.DirEntry instead of os.FileInfo after os.ReadDir
Signed-off-by: MOREL Matthieu <matthieu.morel@cnp.fr>
* Write chunks via queue, predicting the refs
Our load tests have shown that there is a latency spike in the
remote write handler whenever the head chunks need to be written,
because chunkDiskMapper.WriteChunk() blocks until the chunks are written
to disk.
This adds a queue to the chunk disk mapper which makes the WriteChunk()
method non-blocking unless the queue is full. Reads can still be served
from the queue.
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* address PR feeddback
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* initialize metrics without .Add(0)
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* change isRunningMtx to normal lock
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* do not re-initialize chunkrefmap
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* update metric outside of lock scope
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* add benchmark for adding job to chunk write queue
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* remove unnecessary "success" var
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* gofumpt -extra
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* avoid WithLabelValues call in addJob
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* format comments
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* addressing PR feedback
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* rename cutExpectRef to cutAndExpectRef
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* use head.Init() instead of .initTime()
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* address PR feedback
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* PR feedback
Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com>
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* update test according to PR feedback
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* replace callbackWg -> awaitCb
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* better test of truncation with empty files
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
* replace callbackWg -> awaitCb
Signed-off-by: Mauro Stettler <mauro.stettler@gmail.com>
Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com>
* Add basic initial developer docs for TSDB
There's a decent amount of content already out there (blog posts,
conference talks, etc), but:
* when they get stale, they don't tend to get updated
* they still leave me with questions that I'ld like to answer
for developers (like me) who want to use, or work with, TSDB
What I propose is developer docs inside the prometheus
repository. Easy to find and harness the power of the community
to expand it and keep it up to date.
* perfect is the enemy of good. Let's have a base and incrementally improve
* Markdown docs should be broad but not too deep. Source code comments
can complement them, and are the ideal place for implementation details.
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* use example code that works out of the box
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* Apply suggestions from code review
Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com>
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* PR feedback
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* more docs
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* PR feedback
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* Apply suggestions from code review
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
Co-authored-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Apply suggestions from code review
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com>
* feedback
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* Update tsdb/docs/usage.md
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com>
* final tweaks
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* workaround docs versioning issue
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* Move example code to real executable, testable example.
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* cleanup example test and make sure it always reproduces
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* obtain temp dir in a way that works with older Go versions
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* Fix Ganesh's comments
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com>
Co-authored-by: Bartlomiej Plotka <bwplotka@gmail.com>
Co-authored-by: Ganesh Vernekar <ganeshvern@gmail.com>
* TSDB: demistify seriesRefs and ChunkRefs
The TSDB package contains many types of series and chunk references,
all shrouded in uint types. Often the same uint value may
actually mean one of different types, in non-obvious ways.
This PR aims to clarify the code and help navigating to relevant docs,
usage, etc much quicker.
Concretely:
* Use appropriately named types and document their semantics and
relations.
* Make multiplexing and demuxing of types explicit
(on the boundaries between concrete implementations and generic
interfaces).
* Casting between different types should be free. None of the changes
should have any impact on how the code runs.
TODO: Implement BlockSeriesRef where appropriate (for a future PR)
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* feedback
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* agent: demistify seriesRefs and ChunkRefs
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* Use dedicated Ref type
Throughout the code base, there are reference types masked as
regular integers. Let's use dedicated types. They are
equivalent, but clearer semantically.
This also makes it trivial to find where they are used,
and from uses, find the centralized docs.
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* postpone some work until after possible return
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* clarify
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* rename feedback
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* skip header is up to caller
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* Added test to reproduce panic on TSDB head chunks truncated while querying
Signed-off-by: Marco Pracucci <marco@pracucci.com>
* Added test for Querier too
Signed-off-by: Marco Pracucci <marco@pracucci.com>
* Stop the bleed on mmap-ed head chunks panic
Signed-off-by: Marco Pracucci <marco@pracucci.com>
* Lower memory pressure in tests to ensure it doesn't OOM
Signed-off-by: Marco Pracucci <marco@pracucci.com>
* Skip TestQuerier_ShouldNotPanicIfHeadChunkIsTruncatedWhileReadingQueriedChunks
Signed-off-by: Marco Pracucci <marco@pracucci.com>
* Experiment to not trigger runtime.GC() continuously
Signed-off-by: Marco Pracucci <marco@pracucci.com>
* Try to fix test in CI
Signed-off-by: Marco Pracucci <marco@pracucci.com>
* Do not call runtime.GC() at all
Signed-off-by: Marco Pracucci <marco@pracucci.com>
* I have no idea why it's failing in CI, skipping tests
Signed-off-by: Marco Pracucci <marco@pracucci.com>
