Optimize histogram iterators
Histogram iterators allocate new objects in the AtHistogram and
AtFloatHistogram methods, which makes calculating rates over long
ranges expensive.
In #13215 we allowed an existing object to be reused
when converting an integer histogram to a float histogram. This commit follows
the same idea and allows injecting an existing object in the AtHistogram and
AtFloatHistogram methods. When the injected value is nil, iterators allocate
new histograms, otherwise they populate and return the injected object.
The commit also adds a CopyTo method to Histogram and FloatHistogram which
is used in the BufferedIterator to overwrite items in the ring instead of making
new copies.
Note that a specialized HPoint pool is needed for all of this to work
(`matrixSelectorHPool`).
---------
Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
Co-authored-by: George Krajcsovits <krajorama@users.noreply.github.com>
Conditions are ANDed inside the same matcher but matchers are ORed
Including unit tests for "promtool tsdb dump".
Refactor some matchers scraping utils.
Signed-off-by: machine424 <ayoubmrini424@gmail.com>
The 'ToFloat' method on integer histograms currently allocates new memory
each time it is called.
This commit adds an optional *FloatHistogram parameter that can be used
to reuse span and bucket slices. It is up to the caller to make sure the
input float histogram is not used anymore after the call.
Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
In the past, every sample value was a float, so it was fine to call a
variable holding such a float "value" or "sample". With native
histograms, a sample might have a histogram value. And a histogram
value is still a value. Calling a float value just "value" or "sample"
or "V" is therefore misleading. Over the last few commits, I already
renamed many variables, but this cleans up a few more places where the
changes are more invasive.
Note that we do not to attempt naming in the JSON APIs or in the
protobufs. That would be quite a disruption. However, internally, we
can call variables as we want, and we should go with the option of
avoiding misunderstandings.
Signed-off-by: beorn7 <beorn@grafana.com>
Previously, we had one “polymorphous” `sample` type in the `storage`
package. This commit breaks it up into `fSample`, `hSample`, and
`fhSample`, each still implementing the `tsdbutil.Sample` interface.
This reduces allocations in `sampleRing.Add` but inflicts the penalty
of the interface wrapper, which makes things worse in total.
This commit therefore just demonstrates the step taken. The next
commit will tackle the interface overhead problem.
Signed-off-by: beorn7 <beorn@grafana.com>
In other words: Instead of having a “polymorphous” `Point` that can
either contain a float value or a histogram value, use an `FPoint` for
floats and an `HPoint` for histograms.
This seemingly small change has a _lot_ of repercussions throughout
the codebase.
The idea here is to avoid the increase in size of `Point` arrays that
happened after native histograms had been added.
The higher-level data structures (`Sample`, `Series`, etc.) are still
“polymorphous”. The same idea could be applied to them, but at each
step the trade-offs needed to be evaluated.
The idea with this change is to do the minimum necessary to get back
to pre-histogram performance for functions that do not touch
histograms. Here are comparisons for the `changes` function. The test
data doesn't include histograms yet. Ideally, there would be no change
in the benchmark result at all.
First runtime v2.39 compared to directly prior to this commit:
```
name old time/op new time/op delta
RangeQuery/expr=changes(a_one[1d]),steps=1-16 391µs ± 2% 542µs ± 1% +38.58% (p=0.000 n=9+8)
RangeQuery/expr=changes(a_one[1d]),steps=10-16 452µs ± 2% 617µs ± 2% +36.48% (p=0.000 n=10+10)
RangeQuery/expr=changes(a_one[1d]),steps=100-16 1.12ms ± 1% 1.36ms ± 2% +21.58% (p=0.000 n=8+10)
RangeQuery/expr=changes(a_one[1d]),steps=1000-16 7.83ms ± 1% 8.94ms ± 1% +14.21% (p=0.000 n=10+10)
RangeQuery/expr=changes(a_ten[1d]),steps=1-16 2.98ms ± 0% 3.30ms ± 1% +10.67% (p=0.000 n=9+10)
RangeQuery/expr=changes(a_ten[1d]),steps=10-16 3.66ms ± 1% 4.10ms ± 1% +11.82% (p=0.000 n=10+10)
RangeQuery/expr=changes(a_ten[1d]),steps=100-16 10.5ms ± 0% 11.8ms ± 1% +12.50% (p=0.000 n=8+10)
RangeQuery/expr=changes(a_ten[1d]),steps=1000-16 77.6ms ± 1% 87.4ms ± 1% +12.63% (p=0.000 n=9+9)
RangeQuery/expr=changes(a_hundred[1d]),steps=1-16 30.4ms ± 2% 32.8ms ± 1% +8.01% (p=0.000 n=10+10)
RangeQuery/expr=changes(a_hundred[1d]),steps=10-16 37.1ms ± 2% 40.6ms ± 2% +9.64% (p=0.000 n=10+10)
RangeQuery/expr=changes(a_hundred[1d]),steps=100-16 105ms ± 1% 117ms ± 1% +11.69% (p=0.000 n=10+10)
RangeQuery/expr=changes(a_hundred[1d]),steps=1000-16 783ms ± 3% 876ms ± 1% +11.83% (p=0.000 n=9+10)
```
And then runtime v2.39 compared to after this commit:
```
name old time/op new time/op delta
RangeQuery/expr=changes(a_one[1d]),steps=1-16 391µs ± 2% 547µs ± 1% +39.84% (p=0.000 n=9+8)
RangeQuery/expr=changes(a_one[1d]),steps=10-16 452µs ± 2% 616µs ± 2% +36.15% (p=0.000 n=10+10)
RangeQuery/expr=changes(a_one[1d]),steps=100-16 1.12ms ± 1% 1.26ms ± 1% +12.20% (p=0.000 n=8+10)
RangeQuery/expr=changes(a_one[1d]),steps=1000-16 7.83ms ± 1% 7.95ms ± 1% +1.59% (p=0.000 n=10+8)
RangeQuery/expr=changes(a_ten[1d]),steps=1-16 2.98ms ± 0% 3.38ms ± 2% +13.49% (p=0.000 n=9+10)
RangeQuery/expr=changes(a_ten[1d]),steps=10-16 3.66ms ± 1% 4.02ms ± 1% +9.80% (p=0.000 n=10+9)
RangeQuery/expr=changes(a_ten[1d]),steps=100-16 10.5ms ± 0% 10.8ms ± 1% +3.08% (p=0.000 n=8+10)
RangeQuery/expr=changes(a_ten[1d]),steps=1000-16 77.6ms ± 1% 78.1ms ± 1% +0.58% (p=0.035 n=9+10)
RangeQuery/expr=changes(a_hundred[1d]),steps=1-16 30.4ms ± 2% 33.5ms ± 4% +10.18% (p=0.000 n=10+10)
RangeQuery/expr=changes(a_hundred[1d]),steps=10-16 37.1ms ± 2% 40.0ms ± 1% +7.98% (p=0.000 n=10+10)
RangeQuery/expr=changes(a_hundred[1d]),steps=100-16 105ms ± 1% 107ms ± 1% +1.92% (p=0.000 n=10+10)
RangeQuery/expr=changes(a_hundred[1d]),steps=1000-16 783ms ± 3% 775ms ± 1% -1.02% (p=0.019 n=9+9)
```
In summary, the runtime doesn't really improve with this change for
queries with just a few steps. For queries with many steps, this
commit essentially reinstates the old performance. This is good
because the many-step queries are the one that matter most (longest
absolute runtime).
In terms of allocations, though, this commit doesn't make a dent at
all (numbers not shown). The reason is that most of the allocations
happen in the sampleRingIterator (in the storage package), which has
to be addressed in a separate commit.
Signed-off-by: beorn7 <beorn@grafana.com>
In most cases, there is no sample at `maxt`, so `PeekBack` has to be
used. So far, `PeekBack` did not return a float histogram, and we
disregarded even any returned normal histogram. This fixes both, and
also tweaks the unit test to discover the problem (by using an earlier
timestamp than "now" for the samples in the TSDB).
Signed-off-by: beorn7 <beorn@grafana.com>
Patterned after `Chunk.Iterator()`: pass the old iterator in so it
can be re-used to avoid allocating a new object.
(This commit does not do any re-use; it is just changing all the method
signatures so re-use is possible in later commits.)
Signed-off-by: Bryan Boreham <bjboreham@gmail.com>
- Pick At... method via return value of Next/Seek.
- Do not clobber returned buckets.
- Add partial FloatHistogram suppert.
Note that the promql package is now _only_ dealing with
FloatHistograms, following the idea that PromQL only knows float
values.
As a byproduct, I have removed the histogramSeries metric. In my
understanding, series can have both float and histogram samples, so
that metric doesn't make sense anymore.
As another byproduct, I have converged the sampleBuf and the
histogramSampleBuf in memSeries into one. The sample type stored in
the sampleBuf has been extended to also contain histograms even before
this commit.
Signed-off-by: beorn7 <beorn@grafana.com>
This is to avoid copying the many fields of a histogram.Histogram all
the time.
This also fixes a bunch of formerly broken tests.
Signed-off-by: beorn7 <beorn@grafana.com>
This creates a new `model` directory and moves all data-model related
packages over there:
exemplar labels relabel rulefmt textparse timestamp value
All the others are more or less utilities and have been moved to `util`:
gate logging modetimevfs pool runtime
Signed-off-by: beorn7 <beorn@grafana.com>
* Add errors and Warnings to SeriesSet
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Change Querier interface and refactor accordingly
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Refactor promql/engine to propagate warnings at eval stage
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Address review issues
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Make sure all the series from all Selects are pre-advanced
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Address review issues
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Separate merge series sets
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Clean
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Refactor merge querier failure handling
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Refactored and simplified fanout with improvements from incoming chunk iterator PRs.
* Secondary logic is hidden, instead of weird failed series set logic we had.
* Fanout is well commented
* Fanout closing record all errors
* MergeQuerier improved API (clearer)
* deferredGenericMergeSeriesSet is not needed as we return no samples anyway for failed series sets (next = false).
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Fix formatting
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Fix CI issues
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Added final tests for error handling.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Addressed Brian's comments.
* Moved hints in populate to be allocated only when needed.
* Used sync.Once in secondary Querier to achieve all-or-nothing partial response logic.
* Select after first Next is done will panic.
NOTE: in lazySeriesSet in theory we could just panic, I think however we can
totally just return error, it will panic in expand anyway.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Utilize errWithWarnings
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Fix recently introduced expansion issue
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Add tests for secondary querier error handling
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Implement lazy merge
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Add name to test cases
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Reorganize
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Address review comments
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Address review comments
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Remove redundant warnings
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
* Fix rebase mistake
Signed-off-by: Kemal Akkoyun <kakkoyun@gmail.com>
Co-authored-by: Bartlomiej Plotka <bwplotka@gmail.com>
* storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation.
## Rationales:
In many places (e.g. chunk Remote read, Thanos Receive fetching chunk from TSDB), we operate on encoded chunks not samples.
This means that we unnecessary decode/encode, wasting CPU, time and memory.
This PR adds chunk iterator interfaces and makes the merge code to be reused between both seriesSets
I will make the use of it in following PR inside tsdb itself. For now fanout implements it and mergers.
All merges now also allows passing series mergers. This opens doors for custom deduplications other than TSDB vertical ones (e.g. offline one we have in Thanos).
## Changes
* Added Chunk versions of all iterating methods. It all starts in Querier/ChunkQuerier. The plan is that
Storage will implement both chunked and samples.
* Added Seek to chunks.Iterator interface for iterating over chunks.
* NewMergeChunkQuerier was added; Both this and NewMergeQuerier are now using generigMergeQuerier to share the code. Generic code was added.
* Improved tests.
* Added some TODO for further simplifications in next PRs.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Addressed Brian's comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Moved s/Labeled/SeriesLabels as per Krasi suggestion.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Addressed Krasi's comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Second iteration of Krasi comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Another round of comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
This is technically BREAKING CHANGE, but it was like this from the beginning: I just notice that we rely in
Prometheus on remote read being sorted. This is because we use selected data from remote reads in MergeSeriesSet
which rely on sorting.
I found during work on https://github.com/prometheus/prometheus/pull/5882 that
we do so many repetitions because of this, for not good reason. I think
I found a good balance between convenience and readability with just one method.
Smaller the interface = better.
Also I don't know what TestSelectSorted was testing, but now it's testing sorting.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Make lookbackDelta a option of QueryEngine
Signed-off-by: Julien Pivotto <roidelapluie@inuits.eu>
* julius' suggestion
Signed-off-by: Julien Pivotto <roidelapluie@inuits.eu>
* remove trivial getter
Signed-off-by: Julien Pivotto <roidelapluie@inuits.eu>
* Assume lookback delta is always > 0
Signed-off-by: Julien Pivotto <roidelapluie@inuits.eu>
* add debug log
Signed-off-by: Julien Pivotto <roidelapluie@inuits.eu>
* don't expose loopback delta
Signed-off-by: Julien Pivotto <roidelapluie@inuits.eu>
* Specify that lookack delta is also used in federation
Signed-off-by: Julien Pivotto <roidelapluie@inuits.eu>
* Fix federation test
While we have added some logic to the promql engine to keep it backwards
compatible and have a 5 minute loopback by default, the web/ package is
likely to really be internal to Prometheus and we should not add the
same kind of heuritstics here.
Signed-off-by: Julien Pivotto <roidelapluie@inuits.eu>
* loopback delta: Fix debug log
Signed-off-by: Julien Pivotto <roidelapluie@inuits.eu>
- Unmarshall external_labels config as labels.Labels, add tests.
- Convert some more uses of model.LabelSet to labels.Labels.
- Remove old relabel pkg (fixes#3647).
- Validate external label names.
Signed-off-by: Tom Wilkie <tom.wilkie@gmail.com>
* *: use latest release of staticcheck
It also fixes a couple of things in the code flagged by the additional
checks.
Signed-off-by: Simon Pasquier <spasquie@redhat.com>
* Use official release of staticcheck
Also run 'go list' before staticcheck to avoid failures when downloading packages.
Signed-off-by: Simon Pasquier <spasquie@redhat.com>
When prom2 came out the storage querier interface consolidated to a
single Select() method. While doing this it makes it impossible as the
implementer of the querier to know if you are being called for metadata
or actual data. The workaround has been to check if the SelectParams are
nil, which the federation call is always nil. This has 2 negative
consequences (1) remote implementations interpret this as a metadata
call, which makes the federation endpoint return nothing. (2) this means
that the storage implementations don't get the same information passed
down to them as far as SelectParams goes.
This diff simply adds SelectParams to the Select() call in the
federation handler
Mitigation for #4057
Signed-off-by: Thomas Jackson <jacksontj.89@gmail.com>
There are many more (mostly finalizers like Close/Stop/etc.), but most of
the others seemed like one couldn't do much about them anyway.
Signed-off-by: Julius Volz <julius.volz@gmail.com>
* Allow for BufferedSeriesIterator instances to be created without an underlying iterator, to simplify their usage.
Signed-off-by: Alin Sinpalean <alin.sinpalean@gmail.com>
This adds a parameter to the storage selection interface which allows
query engine(s) to pass information about the operations surrounding a
data selection.
This can for example be used by remote storage backends to infer the
correct downsampling aggregates that need to be provided.
Federation makes use of dedupedSeriesSet to merge SeriesSets for every
query into one output stream. If many match[] arguments are provided,
many dedupedSeriesSet objects will get chained. This has the downside of
causing a potential O(n*k) running time, where n is the number of series
and k the number of match[] arguments.
In the mean time, the storage package provides a mergeSeriesSet that
accomplishes the same with an O(n*log(k)) running time by making use of
a binary heap. Let's just get rid of dedupedSeriesSet and change all
existing callers to use mergeSeriesSet.
* Re-add contexts to storage.Storage.Querier()
These are needed when replacing the storage by a multi-tenant
implementation where the tenant is stored in the context.
The 1.x query interfaces already had contexts, but they got lost in 2.x.
* Convert promql.Engine to use native contexts
This PR adds the `/status/config` endpoint which exposes the currently
loaded Prometheus config. This is the same config that is displayed on
`/config` in the UI in YAML format. The response payload looks like
such:
```
{
"status": "success",
"data": {
"yaml": <CONFIG>
}
}
```
To cover the cases where stale markers may not be available,
we need to infer the interval and mark series stale based on that.
As we're lacking stale markers this is less accurate, however
it should be good enough for these cases.
We need 4 intervals as if say we had data at t=0 and t=10,
coming via federation. The next data point should be at t=20 however it
could take up to t=30 for it actually to be ingested, t=40 for it to be
scraped via federation and t=50 for it to be ingested.
We then add 10% on to that for slack, as we do elsewhere.
