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237 commits

Author SHA1 Message Date
Matt Bostock 4d5ca4b9c1 db: Fix typo: reference 2017-04-14 22:02:06 +01:00
Matt Bostock 3dd5a4ee09 db: Add comment: Appender not goroutine safe 2017-04-14 21:39:08 +01:00
Fabian Reinartz 778103b450 Add liecence file and headers 2017-04-10 20:59:45 +02:00
Fabian Reinartz 10c7c9acbe Adjust import names to new repository organisation 2017-04-04 11:27:26 +02:00
Fabian Reinartz 767b88a3a5 Parallelize commits to prevent deadlocks 
This parallelizes commits to prevent deadlocks across inconsistently
locked heads. As commits are currently not fully atomic across
heads, this does decrease our guarantees.
 2017-04-04 11:21:19 +02:00
Fabian Reinartz a52980e0a8 Add workaround for deadlocks 
This adds a workaround to avoid deadlocks for inconsistent write lock
order across headBlocks.
Things keep working if transactions only append data for the same
timestamp, which is generally the case for Prometheus.

Full behavior should be restored in a subsequent change.
 2017-03-27 19:05:34 +02:00
Fabian Reinartz e478d0e3bc Actually close olds blocks in reloadBlocks 
This fixes a bug leaking memory because blocks were not actually closed
as the closing call references the initial, empty slice
 2017-03-23 18:27:20 +01:00
Fabian Reinartz 70909ca8ad Ensure GC runs after each compactor call 
GC is triggered rarely, which may cause unnecessarily high memory
spikes when running several compaction cycles in a row. Explicitly run
GC so we don't have idle bytes marked as used from the previous cycle.
 2017-03-21 12:21:02 +01:00
Fabian Reinartz 55ee4b5b3b Merge branch 'master' of github.com:fabxc/tsdb 2017-03-21 10:11:39 +01:00
Fabian Reinartz c18e055d7c Fix races and add comments on remaining ones 2017-03-21 10:11:23 +01:00
Fabian Reinartz e837034360 Merge pull request #14 from Gouthamve/log-update 
Update kit/log To New API
 2017-03-21 09:56:32 +01:00
Fabian Reinartz 9c93f8f2aa Fix various races 
This fixes different race condition encoutnered when running Prometheus.
It reduces the overall performance in the synthetic benchmark a fair bit
but has no indiciations of impacting a real-world setup notably.
 2017-03-20 14:45:27 +01:00
Fabian Reinartz 3635569257 Trigger reload correctly on interrupted compaction 2017-03-20 10:41:43 +01:00
Fabian Reinartz 2c999836fb Add Queryable interface to Block 
This adds the Queryable interface to the Block interface. Head and
persisted blocks now implement their own Querier() method and thus
isolate customization (e.g. remapPostings) more cleanly.
 2017-03-20 10:21:21 +01:00
Fabian Reinartz 11be2cc585 Add composed Block interfaces, remove head generation 
This adds more lower-leve interfaces which are used to compose
to different Block interfaces.
The DB only uses interfaces instead of explicit persistedBlock and
headBlock. The headBlock generation property is dropped as the use-case
can be implemented using block sequence numbers.
 2017-03-20 09:02:36 +01:00
Goutham Veeramachaneni df7db4ac07
Update kit/log To New API 
NewContext has been removed couple of weeks back.
Ref: https://github.com/go-kit/kit/releases/tag/v0.4.0
 2017-03-19 21:03:09 +05:30
Fabian Reinartz 303a4ec3bc Sync directory on retention delation 2017-03-19 13:50:35 +01:00
Fabian Reinartz 863d38dfee Fix unreturned lock 2017-03-17 15:56:19 +01:00
Fabian Reinartz d0770302ed Add retention deletion 2017-03-17 15:30:05 +01:00
Fabian Reinartz 4962175218 Fix deadlock between heads and headmtx 
With hundreds of concurrent appenders the locking order between the
headBlocks on instantiating appenders and write locking the headmtx
is hard to impossible to get consistent.
Just never instantiate appenders while holding the headmtx lock in any
way.
 2017-03-17 14:10:18 +01:00
Fabian Reinartz 65b846ae5b Remove unreturned locks, detect writes on closed heads 2017-03-17 12:12:50 +01:00
Fabian Reinartz 32c32013a6 Fix loading of persisted blocks 2017-03-09 15:40:13 +01:00
Fabian Reinartz cb4dde7659 Fix WAL log recovery bug 
This fixes a bug where the last WAL file was closed after consuming it
instead of being left open for further writes.
Reloading of blocks on startup considers loading head blocks now.
 2017-03-08 16:53:07 +01:00
Fabian Reinartz 3910b913bd Revert interval overlap comparison changes 2017-03-07 12:01:25 +01:00
Fabian Reinartz 87805fb83f Remove Partitioned* code 2017-03-06 17:34:49 +01:00
Fabian Reinartz eedbebe1d7 Misc cleanups 2017-03-06 14:34:49 +01:00
Fabian Reinartz 50791a412e Remove leaky Appender abstraction for hashedAppend 2017-03-06 14:27:33 +01:00
Fabian Reinartz 87d270fe11 Fix interval check, make DB shutdown concurrent 2017-03-06 12:13:15 +01:00
Fabian Reinartz 04783831e2 Correctly close compacted blocks. 2017-03-06 09:33:55 +01:00
Fabian Reinartz 55a9b5428a Add separate head mutex 
Introduce a seperate mutex for the head blocks to avoid a race where
a post-compaction reload may run between switching the DB's base mutex
to create a new head block in an appender.
 2017-03-04 17:41:01 +01:00
Fabian Reinartz 3e569bc964 Optimize memory allocations in writer 2017-03-02 23:35:02 +01:00
Fabian Reinartz ffb24a98f4 Add missing unlock, run debug endpoint in benchmark 2017-03-02 21:54:02 +01:00
Fabian Reinartz 92120448c2 Properly cleanup compacted dirs, fixes, docs 2017-03-02 14:32:09 +01:00
Fabian Reinartz 2c3e778d90 Compactor interface 2017-03-02 09:17:30 +01:00
Fabian Reinartz 2c3b56350a Write meta.json file atomically 2017-03-01 17:19:57 +01:00
Fabian Reinartz 6c4217276f Periodically trigger compaction 
This addresses an issue where the compaction triggered on cutting
a new block doesn't find anything as the writers are still active on the
block that should be ready for compaction.
 2017-03-01 16:52:21 +01:00
Fabian Reinartz db5c88ea9a Misc compaction fixes 2017-02-28 08:40:51 +01:00
Fabian Reinartz b281e4e39b Accept prometheus.Registerer in constructor 2017-02-28 07:26:24 +01:00
Fabian Reinartz 306831f151 Add per-block state ULID 2017-02-27 10:46:15 +01:00
Fabian Reinartz 78780cd2ba Segment chunk file 
This adds write path support for segmented chunk data files.
Files of 512MB are pre-allocated and written to. If the file size
is exceeded, the next file is started. On completion, files
are truncated to their final size.
 2017-02-23 10:50:22 +01:00
Fabian Reinartz a3b47c4929 Create default logger for DB 2017-02-19 16:04:37 +01:00
Fabian Reinartz f734773214 Replace per-file locking with single PID lock file 
File locks have a multitude of problems that make them hard to use
correctly. As they are just advisory, they are only meaningful to
prevent accidents like running the same process twice.
A simple PID file lock works reliably in those cases and is simpler.
 2017-02-19 13:01:19 +01:00
Fabian Reinartz 79944a5912 Break out WAL into segment files 2017-02-13 23:53:19 -08:00
Fabian Reinartz 987a90d149 Don't delete files if retention duration is 0 2017-02-11 11:49:17 -08:00
Fabian Reinartz 9c76624df2 Add initial retention cutoff 2017-02-09 17:54:26 -08:00
Fabian Reinartz f1435f2e2c Track appended samples properly in metric 2017-02-08 16:13:16 -08:00
Fabian Reinartz 012cf4ef25 Count writer references on head blocks 2017-02-04 11:53:52 +01:00
Fabian Reinartz 5a1c8eaa0e Fix missing appends after reference lookups 2017-02-02 11:10:17 +01:00
Fabian Reinartz f556036037 Close blocks before overwriting with compacted one 
This prevents the meta.json file of a compacted block
to be overwritten with data of the old block.
 2017-02-02 09:32:06 +01:00
Fabian Reinartz ac5229e1b4 Correctly write empty blocks and extend appenders by new blocks 2017-02-02 07:58:54 +01:00
Fabian Reinartz 42fa342229 Improve multi-head handling 
This improves handling of multiple head blocks. Configuration is
simplified to specify the number of concurrently appendable blocks.
 2017-02-01 21:35:21 +01:00
Fabian Reinartz 30efe4a58c Support writing to multiple head blocks 
This is an initial (and hacky) first pass on allowing
appending to multiple blocks simultaniously to avoid
dropping samples right after cutting a new head block.
It's also required for cases like the PGW, where a scrape may
contain varying timestamps.
 2017-02-01 15:57:28 +01:00
Fabian Reinartz a61a31a5d7 compaction: add fast-path for compacting mem blocks 2017-01-30 09:49:36 +01:00
Fabian Reinartz c20cc44b06 Add docs, write sequence number to meta.json 2017-01-29 08:11:47 +01:00
Fabian Reinartz 30d8866c13 Limit compaction range, make cut and compact concurrent 2017-01-20 07:58:19 +01:00
Fabian Reinartz 67d185ceb9 Compact based on compaction generation 2017-01-19 19:45:52 +01:00
Fabian Reinartz d4779b374c Properly track and write meta file 2017-01-19 14:01:38 +01:00
Fabian Reinartz 9ddbd64d00 Move stats into meta.json file, cleanup, docs 2017-01-19 11:22:47 +01:00
Fabian Reinartz e006bc6dc6 Improve error messages, create regular dir for block 2017-01-19 08:40:15 +01:00
Fabian Reinartz d2322f6095 Improve compaction processing 2017-01-18 06:18:32 +01:00
Fabian Reinartz 343dd9d94c Fix wrong byte size in WAL base ref 2017-01-17 08:40:31 +01:00
Fabian Reinartz dd0b69fe1b Export ErrNotFound 2017-01-16 14:18:32 +01:00
Fabian Reinartz 1c80c33e72 Fix bug of unsorted postings lists being created 
The former approach created unordered postings list by either
map iteration of new series being unsorted (fixable) or concurrent
writers creating new series interleaved.

We switch back to generating ephemeral references for a single batch.
Newly created series have to be re-set upon the next insert.
 2017-01-13 16:22:20 +01:00
Fabian Reinartz c7f5590a71 Ensure order of postings when adding new series 2017-01-13 15:25:11 +01:00
Fabian Reinartz d970f0256a Add Rollback() and docs to Appender interface 2017-01-12 20:17:49 +01:00
Fabian Reinartz 22db9c3413 Remove old appendBatch methods 2017-01-12 20:04:49 +01:00
Fabian Reinartz a317f252b9 Expose series references to clients 
This exposes a reference number of a series represented by a label set
to clients.
Subsequent samples can be directly added via the reference rather than
repeatedly passing in the full labels. This drasitcally speeds up the
append process.

The appender chain uses different sections of the reference number for
assignment to child appenders and invalidating reference numbers as
necessary.

Clients can either pass out reference numbers themselves or have their
own optimized lookup, i.e. by directly associating unparsed metric
descriptors strings with reference numbers.
 2017-01-12 20:00:54 +01:00
Fabian Reinartz c32a94d409 Unexport HeadBlock, export Block interface 2017-01-10 15:41:57 +01:00
Fabian Reinartz 29883a18fc Add own Appender() method for DB 2017-01-09 22:54:08 +01:00
Fabian Reinartz 142c89b8b0 Fix/update metrics 2017-01-09 19:14:21 +01:00
Fabian Reinartz 8c31c6e934 Make concurrent head chunk reads safe, fix misc races 
This adds a 4 sample buffer to every head chunk. The XOR
compression scheme may edit bytes in place. The minimum size
of a sample is 2 bits. So keeping the last 4 samples in an in-memory
buffer makes it safe to query the preceeding ones while samples
are added
 2017-01-09 16:51:39 +01:00
Fabian Reinartz 1943f8d1bb Fix head block stats races 2017-01-07 18:02:17 +01:00
Fabian Reinartz 300f4e2abf Use separate lock for series creation 
This uses the head block's own lock to only lock if new series were
encountered.
In the general append case we just need to hold a
 2017-01-06 18:10:50 +01:00
Fabian Reinartz 63e12807da Don't update head postings mapper on every append 2017-01-06 16:43:18 +01:00
Fabian Reinartz 71efd2e08d Periodically fsync WAL, make head cut async 2017-01-06 15:18:06 +01:00
Fabian Reinartz 2eb544c98e Change file names and maker parsing safer 2017-01-06 13:13:22 +01:00
Fabian Reinartz 96c2bd249f Handle compaction trigger and reinitializing in DB 2017-01-06 13:03:23 +01:00
Fabian Reinartz 3ed2c2a14b Rename Partition to regular DB, DB to PartitionedDB 2017-01-06 11:40:09 +01:00
Fabian Reinartz 937cdb579c Switch to sequential block names 
This changes block directory names from the int64 timestamp
to sequential numbering.
 2017-01-06 10:45:03 +01:00
Fabian Reinartz 4590b61343 Rename shard to partition 2017-01-06 08:08:02 +01:00
Fabian Reinartz 5aa7f7cce8 Compact head block into persisted block 2017-01-04 21:11:15 +01:00
Fabian Reinartz 3f72d5d027 Fix last timestamp initialization 
This initializes the chunkDesc's last timestamp to the minimum
value so initial samples with a timestamp of 0 (e.g. in tests)
are not accidentally dropped.
 2017-01-04 14:06:40 +01:00
Fabian Reinartz ec99f99d3d Fix and test bug in shardSeriesSet 2017-01-03 19:02:42 +01:00
Fabian Reinartz ac49f8c15e Consolidate persistence and compaction 2017-01-03 16:49:37 +01:00
Fabian Reinartz 91b65b55e7 Run persistence in separate goroutine 2017-01-02 22:24:35 +01:00
Fabian Reinartz a648ef5252 Convert persister into function 2017-01-02 16:58:47 +01:00
Fabian Reinartz dbd2b21d2e Make persistence atomic 2017-01-02 14:41:13 +01:00
Fabian Reinartz 62b8ded0a5 Rename iterator value getters to At() 2017-01-02 13:33:06 +01:00
Fabian Reinartz 5d75a3dc7b Add basic compaction 
This adds a basic compactor that will merge two persisted blocks into
one. It simply fully rewrites the index and concatenates the chunk
lists.

It just writes into the current working dir and doesn't properly handle
which blocks to compact for now.
 2017-01-02 10:34:55 +01:00
Fabian Reinartz c00d17e691 Modify IndexReader API to accomodate compaction 
This changes the IndexReader API to expose plain labels
and chunk meta information instead of a Series interface.
Dropping of irrelevant chunks is moved into the querier.

A LabelIndices method is added to query for existing label
value indices.
 2016-12-31 16:24:04 +01:00
Fabian Reinartz 1e1a37b15b Remove double-reference in chunk hashmap 2016-12-31 10:19:02 +01:00
Fabian Reinartz 675f0886f0 Append to chunks cannot error 2016-12-31 10:10:27 +01:00
Fabian Reinartz 7280533c42 Add basic shard metrics 2016-12-31 09:48:49 +01:00
Fabian Reinartz a009247ab7 Add matching of empty label 2016-12-30 19:36:28 +01:00
Fabian Reinartz eb4f366988 Add return error to Appender.Add 2016-12-29 11:03:39 +01:00
Fabian Reinartz 3a5468f251 Lock shards during querying and shutdown 2016-12-28 11:41:44 +01:00
Fabian Reinartz ab7fbc05ad Zero timestamp as base, use binary search list postings 2016-12-28 08:50:20 +01:00
Fabian Reinartz f8111cef0e Fix chunk series iterator seeking 2016-12-26 16:55:44 +01:00
Fabian Reinartz 787199a88e Fix erroneous value assignments 2016-12-22 20:57:00 +01:00
Fabian Reinartz 8aba95048a Rename to OpenHeadBlock 2016-12-22 20:00:24 +01:00
Fabian Reinartz 9c6a72aadd Load head with WALs correctly 2016-12-22 15:54:39 +01:00
Fabian Reinartz 1dde3b6d31 Add WAL decoder+loading and benchmarks 2016-12-22 15:18:33 +01:00
Fabian Reinartz 0b8c77361e Add initial WAL writing 2016-12-22 12:05:24 +01:00
Fabian Reinartz 2a825f6c28 Consolidate mem index into HeadBlock 2016-12-22 01:12:28 +01:00
Fabian Reinartz da2beb3e6d Fix zero division, add buffer series iterator 2016-12-21 13:04:51 +01:00
Fabian Reinartz ede733ab6c Extract labels package 2016-12-21 09:39:01 +01:00
Fabian Reinartz ee217adc7e Redfine append interface, remove old Prometheus storage from bench 2016-12-21 00:02:37 +01:00
Fabian Reinartz d9ca4b47f5 Fix offset errors, fix persisted postings order 2016-12-20 13:14:55 +01:00
Fabian Reinartz 1b23d62e3f Properly close files before reopening 2016-12-19 22:37:03 +01:00
Fabian Reinartz 00a503129b Use contextualized and traced errors in reader 2016-12-19 22:29:49 +01:00
Fabian Reinartz bad93d8d57 Extract head serialization into Head method 2016-12-18 14:43:27 +01:00
Fabian Reinartz b08f82fa4e Pre-select relevant chunks on series access. 
This adds interval metadata to indexed chunks. The queried interval
is used to filter chunks when queried from the index to save
unnecessary accesses of the chunks file.

This is especially relevant for series that come and go often and larger
files.
 2016-12-16 12:13:17 +01:00
Fabian Reinartz bd77103a49 Add stats serialization, load querier of all blocks 2016-12-15 16:14:33 +01:00
Fabian Reinartz b2f1db5666 Add unsafe string and slice conversions 2016-12-15 11:56:41 +01:00
Fabian Reinartz 5424a0cf75 Rename SeriesShard to Shard 2016-12-15 08:36:09 +01:00
Fabian Reinartz 9873e18b75 Add loading of persisted blocks 2016-12-15 08:36:07 +01:00
Fabian Reinartz ca89080128 Misc fixes for initial Prometheus integration 2016-12-14 18:38:46 +01:00
Fabian Reinartz fc992fafc2 Change querier interface, initial implementations 2016-12-14 15:39:23 +01:00
Fabian Reinartz 6eeb0ef01c Add queriers and partial mocks 2016-12-13 15:26:58 +01:00
Fabian Reinartz 5e02e28f9c Add proper mmap calls 2016-12-11 15:49:36 +01:00
Fabian Reinartz 14dbc59f2b cleanup and switching removal of unsafe calls. 2016-12-10 18:09:57 +01:00
Fabian Reinartz 3a528c3078 Write plain postings list index 2016-12-10 09:44:00 +01:00
Fabian Reinartz 8cbc95c316 Write label value indices 2016-12-09 21:40:38 +01:00
Fabian Reinartz 1e0edf367b Write index with symbol table 2016-12-09 21:23:34 +01:00
Fabian Reinartz 40a451694f Refactor persistence into interfaces 2016-12-09 20:45:46 +01:00
Fabian Reinartz 62f9dc311c misc 2016-12-09 16:54:38 +01:00
Fabian Reinartz 74f8dfd95d Persist blocks periodically 2016-12-09 13:41:38 +01:00
Fabian Reinartz 0cf8bb9e53 Move sub-indexes into single index structure 2016-12-09 10:41:51 +01:00
Fabian Reinartz 8aa99a3ebd misc 2016-12-09 10:00:14 +01:00
Fabian Reinartz 2c34a15fe6 Add initial seriailization of block data 2016-12-08 17:43:10 +01:00
Fabian Reinartz 3ef7da33c8 Restructure files 2016-12-08 12:21:03 +01:00
Fabian Reinartz b845f8d3a1 Reduce test data allocations 2016-12-08 11:59:54 +01:00
Fabian Reinartz 52276c6966 Bucket samples before appending. 
This pre-sorts samples into buckets before appending them to reduce
locking of shards.
 2016-12-07 17:10:49 +01:00
Fabian Reinartz 9b459458d0 Docs and interface definitions 2016-12-05 21:26:19 +01:00
Fabian Reinartz 83574b1565 Add new interfaces and skeleton 2016-12-04 13:16:11 +01:00
Fabian Reinartz 6f93a699e6 wipe 2016-12-02 17:49:05 +01:00
Fabian Reinartz f9f11c4a08 Add main db implementation 2016-11-15 10:34:25 +01:00