This adds bit buckets for larger numbers to varbit encoding and also
an unsigned version of varbit encoding.
Then, varbit encoding is used for all the histogram chunk data instead
of varint.
Signed-off-by: beorn7 <beorn@grafana.com>
A lot of this code was hacked together, literally during a
hackathon. This commit intends not to change the code substantially,
but just make the code obey the usual style practices.
A (possibly incomplete) list of areas:
* Generally address linter warnings.
* The `pgk` directory is deprecated as per dev-summit. No new packages should
be added to it. I moved the new `pkg/histogram` package to `model`
anticipating what's proposed in #9478.
* Make the naming of the Sparse Histogram more consistent. Including
abbreviations, there were just too many names for it: SparseHistogram,
Histogram, Histo, hist, his, shs, h. The idea is to call it "Histogram" in
general. Only add "Sparse" if it is needed to avoid confusion with
conventional Histograms (which is rare because the TSDB really has no notion
of conventional Histograms). Use abbreviations only in local scope, and then
really abbreviate (not just removing three out of seven letters like in
"Histo"). This is in the spirit of
https://github.com/golang/go/wiki/CodeReviewComments#variable-names
* Several other minor name changes.
* A lot of formatting of doc comments. For one, following
https://github.com/golang/go/wiki/CodeReviewComments#comment-sentences
, but also layout question, anticipating how things will look like
when rendered by `godoc` (even where `godoc` doesn't render them
right now because they are for unexported types or not a doc comment
at all but just a normal code comment - consistency is queen!).
* Re-enabled `TestQueryLog` and `TestEndopints` (they pass now,
leaving them disabled was presumably an oversight).
* Bucket iterator for histogram.Histogram is now created with a
method.
* HistogramChunk.iterator now allows iterator recycling. (I think
@dieterbe only commented it out because he was confused by the
question in the comment.)
* HistogramAppender.Append panics now because we decided to treat
staleness marker differently.
Signed-off-by: beorn7 <beorn@grafana.com>
* Support stale samples for sparse histograms
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Don't cut a new chunk for every stale sample
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Update comments for HistoAppender.Appendable
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Fix review comments
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
Previously it was allocating millions of chunks, all containing the
same 250 samples. Above some ratio of CPU performance to available
memory, the benchmark cannot run.
Make 250 a const and just allocate one chunk which we iterate
repeatedly till we reach the benchmark count.
Signed-off-by: Bryan Boreham <bjboreham@gmail.com>
An opinionated cosmetic change, but since go 1.13 we have this fancy
0b.... literals so we don't need to write hex and comment the binary
value.
Signed-off-by: Oleg Zaytsev <mail@olegzaytsev.com>
* Do not panic on histoAppender.Append
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* M-map all chunks on shutdown
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Support negative schema for querying
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* bucketIterator which returns all valid bucket indices for a []span
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* support for comparing []spans and generating interjections
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* add license header
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* assert order fix
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* handle pathological 0-length span case more gracefully
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* stale todo
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* decode-recode histograms when new buckets appear
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* factor out recoding and also add it to the fallback case
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* make linter happy
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* factor out different varbit schemes and include Beorn's "optimum" for buckets
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* use more compact dod encoding scheme for SHS chunk columns
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* remove FB VB and xor dod encoding because we won't use it
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* HistoChunk metadata encoding
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* add SparseHistogram.Copy()
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* histogram test: test appending a few histograms
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* add license headers
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* Append sparse histograms into the Head block
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Add AtHistogram() to Iterator interface. Make HistoChunk conform to Chunk interface.
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* integer types and timestamp separation
1) unify types to int64. as suggested by beorn. we want to support
counters going down (resets) even if we plan to create new chunks for
now, in that case
2) histogram type doesn't know its own timestamp. include it separately
in appending and iteration
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* correction: count and zeroCount to remain unsigned
to make api more resilient and that's what we use in protobuf anyway
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* temp hack. Ganesh will fix
Signed-off-by: Dieter Plaetinck <dieter@grafana.com>
* Testify: move to require
Moving testify to require to fail tests early in case of errors.
Signed-off-by: Julien Pivotto <roidelapluie@inuits.eu>
* More moves
Signed-off-by: Julien Pivotto <roidelapluie@inuits.eu>
* Fixed bstream test license
Signed-off-by: Marco Pracucci <marco@pracucci.com>
* Simplified bstreamReader.loadNextBuffer()
Signed-off-by: Marco Pracucci <marco@pracucci.com>
* Fixed date in license
Signed-off-by: Marco Pracucci <marco@pracucci.com>
* storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation.
## Rationales:
In many places (e.g. chunk Remote read, Thanos Receive fetching chunk from TSDB), we operate on encoded chunks not samples.
This means that we unnecessary decode/encode, wasting CPU, time and memory.
This PR adds chunk iterator interfaces and makes the merge code to be reused between both seriesSets
I will make the use of it in following PR inside tsdb itself. For now fanout implements it and mergers.
All merges now also allows passing series mergers. This opens doors for custom deduplications other than TSDB vertical ones (e.g. offline one we have in Thanos).
## Changes
* Added Chunk versions of all iterating methods. It all starts in Querier/ChunkQuerier. The plan is that
Storage will implement both chunked and samples.
* Added Seek to chunks.Iterator interface for iterating over chunks.
* NewMergeChunkQuerier was added; Both this and NewMergeQuerier are now using generigMergeQuerier to share the code. Generic code was added.
* Improved tests.
* Added some TODO for further simplifications in next PRs.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Addressed Brian's comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Moved s/Labeled/SeriesLabels as per Krasi suggestion.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Addressed Krasi's comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Second iteration of Krasi comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Another round of comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
This is part of https://github.com/prometheus/prometheus/pull/5882 that can be done to simplify things.
All todos I added will be fixed in follow up PRs.
* querier.Querier, querier.Appender, querier.SeriesSet, and querier.Series interfaces merged
with storage interface.go. All imports that.
* querier.SeriesIterator replaced by chunkenc.Iterator
* Added chunkenc.Iterator.Seek method and tests for xor implementation (?)
* Since we properly handle SelectParams for Select methods I adjusted min max
based on that. This should help in terms of performance for queries with functions like offset.
* added Seek to deletedIterator and test.
* storage/tsdb was removed as it was only a unnecessary glue with incompatible structs.
No logic was changed, only different source of abstractions, so no need for benchmarks.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
