mirror of
https://github.com/prometheus/prometheus.git
synced 2024-11-10 07:34:04 -08:00
c59ed492b2
* Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
1034 lines
26 KiB
Go
1034 lines
26 KiB
Go
// Copyright 2017 The Prometheus Authors
|
|
// Licensed under the Apache License, Version 2.0 (the "License");
|
|
// you may not use this file except in compliance with the License.
|
|
// You may obtain a copy of the License at
|
|
//
|
|
// http://www.apache.org/licenses/LICENSE-2.0
|
|
//
|
|
// Unless required by applicable law or agreed to in writing, software
|
|
// distributed under the License is distributed on an "AS IS" BASIS,
|
|
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
// See the License for the specific language governing permissions and
|
|
// limitations under the License.
|
|
|
|
package tsdb
|
|
|
|
import (
|
|
"context"
|
|
"fmt"
|
|
"io"
|
|
"math"
|
|
"math/rand"
|
|
"os"
|
|
"path/filepath"
|
|
"sort"
|
|
"time"
|
|
|
|
"github.com/go-kit/kit/log"
|
|
"github.com/go-kit/kit/log/level"
|
|
"github.com/oklog/ulid"
|
|
"github.com/pkg/errors"
|
|
"github.com/prometheus/client_golang/prometheus"
|
|
"github.com/prometheus/tsdb/chunkenc"
|
|
"github.com/prometheus/tsdb/chunks"
|
|
"github.com/prometheus/tsdb/fileutil"
|
|
"github.com/prometheus/tsdb/index"
|
|
"github.com/prometheus/tsdb/labels"
|
|
)
|
|
|
|
// ExponentialBlockRanges returns the time ranges based on the stepSize.
|
|
func ExponentialBlockRanges(minSize int64, steps, stepSize int) []int64 {
|
|
ranges := make([]int64, 0, steps)
|
|
curRange := minSize
|
|
for i := 0; i < steps; i++ {
|
|
ranges = append(ranges, curRange)
|
|
curRange = curRange * int64(stepSize)
|
|
}
|
|
|
|
return ranges
|
|
}
|
|
|
|
// Compactor provides compaction against an underlying storage
|
|
// of time series data.
|
|
type Compactor interface {
|
|
// Plan returns a set of non-overlapping directories that can
|
|
// be compacted concurrently.
|
|
// Results returned when compactions are in progress are undefined.
|
|
Plan(dir string) ([]string, error)
|
|
|
|
// Write persists a Block into a directory.
|
|
// No Block is written when resulting Block has 0 samples, and returns empty ulid.ULID{}.
|
|
Write(dest string, b BlockReader, mint, maxt int64, parent *BlockMeta) (ulid.ULID, error)
|
|
|
|
// Compact runs compaction against the provided directories. Must
|
|
// only be called concurrently with results of Plan().
|
|
// Can optionally pass a list of already open blocks,
|
|
// to avoid having to reopen them.
|
|
// When resulting Block has 0 samples
|
|
// * No block is written.
|
|
// * The source dirs are marked Deletable.
|
|
// * Returns empty ulid.ULID{}.
|
|
Compact(dest string, dirs []string, open []*Block) (ulid.ULID, error)
|
|
}
|
|
|
|
// LeveledCompactor implements the Compactor interface.
|
|
type LeveledCompactor struct {
|
|
metrics *compactorMetrics
|
|
logger log.Logger
|
|
ranges []int64
|
|
chunkPool chunkenc.Pool
|
|
ctx context.Context
|
|
}
|
|
|
|
type compactorMetrics struct {
|
|
ran prometheus.Counter
|
|
populatingBlocks prometheus.Gauge
|
|
failed prometheus.Counter
|
|
overlappingBlocks prometheus.Counter
|
|
duration prometheus.Histogram
|
|
chunkSize prometheus.Histogram
|
|
chunkSamples prometheus.Histogram
|
|
chunkRange prometheus.Histogram
|
|
}
|
|
|
|
func newCompactorMetrics(r prometheus.Registerer) *compactorMetrics {
|
|
m := &compactorMetrics{}
|
|
|
|
m.ran = prometheus.NewCounter(prometheus.CounterOpts{
|
|
Name: "prometheus_tsdb_compactions_total",
|
|
Help: "Total number of compactions that were executed for the partition.",
|
|
})
|
|
m.populatingBlocks = prometheus.NewGauge(prometheus.GaugeOpts{
|
|
Name: "prometheus_tsdb_compaction_populating_block",
|
|
Help: "Set to 1 when a block is currently being written to the disk.",
|
|
})
|
|
m.failed = prometheus.NewCounter(prometheus.CounterOpts{
|
|
Name: "prometheus_tsdb_compactions_failed_total",
|
|
Help: "Total number of compactions that failed for the partition.",
|
|
})
|
|
m.overlappingBlocks = prometheus.NewCounter(prometheus.CounterOpts{
|
|
Name: "prometheus_tsdb_vertical_compactions_total",
|
|
Help: "Total number of compactions done on overlapping blocks.",
|
|
})
|
|
m.duration = prometheus.NewHistogram(prometheus.HistogramOpts{
|
|
Name: "prometheus_tsdb_compaction_duration_seconds",
|
|
Help: "Duration of compaction runs",
|
|
Buckets: prometheus.ExponentialBuckets(1, 2, 10),
|
|
})
|
|
m.chunkSize = prometheus.NewHistogram(prometheus.HistogramOpts{
|
|
Name: "prometheus_tsdb_compaction_chunk_size_bytes",
|
|
Help: "Final size of chunks on their first compaction",
|
|
Buckets: prometheus.ExponentialBuckets(32, 1.5, 12),
|
|
})
|
|
m.chunkSamples = prometheus.NewHistogram(prometheus.HistogramOpts{
|
|
Name: "prometheus_tsdb_compaction_chunk_samples",
|
|
Help: "Final number of samples on their first compaction",
|
|
Buckets: prometheus.ExponentialBuckets(4, 1.5, 12),
|
|
})
|
|
m.chunkRange = prometheus.NewHistogram(prometheus.HistogramOpts{
|
|
Name: "prometheus_tsdb_compaction_chunk_range_seconds",
|
|
Help: "Final time range of chunks on their first compaction",
|
|
Buckets: prometheus.ExponentialBuckets(100, 4, 10),
|
|
})
|
|
|
|
if r != nil {
|
|
r.MustRegister(
|
|
m.ran,
|
|
m.populatingBlocks,
|
|
m.failed,
|
|
m.overlappingBlocks,
|
|
m.duration,
|
|
m.chunkRange,
|
|
m.chunkSamples,
|
|
m.chunkSize,
|
|
)
|
|
}
|
|
return m
|
|
}
|
|
|
|
// NewLeveledCompactor returns a LeveledCompactor.
|
|
func NewLeveledCompactor(ctx context.Context, r prometheus.Registerer, l log.Logger, ranges []int64, pool chunkenc.Pool) (*LeveledCompactor, error) {
|
|
if len(ranges) == 0 {
|
|
return nil, errors.Errorf("at least one range must be provided")
|
|
}
|
|
if pool == nil {
|
|
pool = chunkenc.NewPool()
|
|
}
|
|
if l == nil {
|
|
l = log.NewNopLogger()
|
|
}
|
|
return &LeveledCompactor{
|
|
ranges: ranges,
|
|
chunkPool: pool,
|
|
logger: l,
|
|
metrics: newCompactorMetrics(r),
|
|
ctx: ctx,
|
|
}, nil
|
|
}
|
|
|
|
type dirMeta struct {
|
|
dir string
|
|
meta *BlockMeta
|
|
}
|
|
|
|
// Plan returns a list of compactable blocks in the provided directory.
|
|
func (c *LeveledCompactor) Plan(dir string) ([]string, error) {
|
|
dirs, err := blockDirs(dir)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
if len(dirs) < 1 {
|
|
return nil, nil
|
|
}
|
|
|
|
var dms []dirMeta
|
|
for _, dir := range dirs {
|
|
meta, err := readMetaFile(dir)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
dms = append(dms, dirMeta{dir, meta})
|
|
}
|
|
return c.plan(dms)
|
|
}
|
|
|
|
func (c *LeveledCompactor) plan(dms []dirMeta) ([]string, error) {
|
|
sort.Slice(dms, func(i, j int) bool {
|
|
return dms[i].meta.MinTime < dms[j].meta.MinTime
|
|
})
|
|
|
|
res := c.selectOverlappingDirs(dms)
|
|
if len(res) > 0 {
|
|
return res, nil
|
|
}
|
|
// No overlapping blocks, do compaction the usual way.
|
|
// We do not include a recently created block with max(minTime), so the block which was just created from WAL.
|
|
// This gives users a window of a full block size to piece-wise backup new data without having to care about data overlap.
|
|
dms = dms[:len(dms)-1]
|
|
|
|
for _, dm := range c.selectDirs(dms) {
|
|
res = append(res, dm.dir)
|
|
}
|
|
if len(res) > 0 {
|
|
return res, nil
|
|
}
|
|
|
|
// Compact any blocks with big enough time range that have >5% tombstones.
|
|
for i := len(dms) - 1; i >= 0; i-- {
|
|
meta := dms[i].meta
|
|
if meta.MaxTime-meta.MinTime < c.ranges[len(c.ranges)/2] {
|
|
break
|
|
}
|
|
if float64(meta.Stats.NumTombstones)/float64(meta.Stats.NumSeries+1) > 0.05 {
|
|
return []string{dms[i].dir}, nil
|
|
}
|
|
}
|
|
|
|
return nil, nil
|
|
}
|
|
|
|
// selectDirs returns the dir metas that should be compacted into a single new block.
|
|
// If only a single block range is configured, the result is always nil.
|
|
func (c *LeveledCompactor) selectDirs(ds []dirMeta) []dirMeta {
|
|
if len(c.ranges) < 2 || len(ds) < 1 {
|
|
return nil
|
|
}
|
|
|
|
highTime := ds[len(ds)-1].meta.MinTime
|
|
|
|
for _, iv := range c.ranges[1:] {
|
|
parts := splitByRange(ds, iv)
|
|
if len(parts) == 0 {
|
|
continue
|
|
}
|
|
|
|
Outer:
|
|
for _, p := range parts {
|
|
// Do not select the range if it has a block whose compaction failed.
|
|
for _, dm := range p {
|
|
if dm.meta.Compaction.Failed {
|
|
continue Outer
|
|
}
|
|
}
|
|
|
|
mint := p[0].meta.MinTime
|
|
maxt := p[len(p)-1].meta.MaxTime
|
|
// Pick the range of blocks if it spans the full range (potentially with gaps)
|
|
// or is before the most recent block.
|
|
// This ensures we don't compact blocks prematurely when another one of the same
|
|
// size still fits in the range.
|
|
if (maxt-mint == iv || maxt <= highTime) && len(p) > 1 {
|
|
return p
|
|
}
|
|
}
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
// selectOverlappingDirs returns all dirs with overlaping time ranges.
|
|
// It expects sorted input by mint.
|
|
func (c *LeveledCompactor) selectOverlappingDirs(ds []dirMeta) []string {
|
|
if len(ds) < 2 {
|
|
return nil
|
|
}
|
|
var overlappingDirs []string
|
|
globalMaxt := ds[0].meta.MaxTime
|
|
for i, d := range ds[1:] {
|
|
if d.meta.MinTime < globalMaxt {
|
|
if len(overlappingDirs) == 0 { // When it is the first overlap, need to add the last one as well.
|
|
overlappingDirs = append(overlappingDirs, ds[i].dir)
|
|
}
|
|
overlappingDirs = append(overlappingDirs, d.dir)
|
|
}
|
|
if d.meta.MaxTime > globalMaxt {
|
|
globalMaxt = d.meta.MaxTime
|
|
}
|
|
}
|
|
return overlappingDirs
|
|
}
|
|
|
|
// splitByRange splits the directories by the time range. The range sequence starts at 0.
|
|
//
|
|
// For example, if we have blocks [0-10, 10-20, 50-60, 90-100] and the split range tr is 30
|
|
// it returns [0-10, 10-20], [50-60], [90-100].
|
|
func splitByRange(ds []dirMeta, tr int64) [][]dirMeta {
|
|
var splitDirs [][]dirMeta
|
|
|
|
for i := 0; i < len(ds); {
|
|
var (
|
|
group []dirMeta
|
|
t0 int64
|
|
m = ds[i].meta
|
|
)
|
|
// Compute start of aligned time range of size tr closest to the current block's start.
|
|
if m.MinTime >= 0 {
|
|
t0 = tr * (m.MinTime / tr)
|
|
} else {
|
|
t0 = tr * ((m.MinTime - tr + 1) / tr)
|
|
}
|
|
// Skip blocks that don't fall into the range. This can happen via mis-alignment or
|
|
// by being the multiple of the intended range.
|
|
if ds[i].meta.MinTime < t0 || ds[i].meta.MaxTime > t0+tr {
|
|
i++
|
|
continue
|
|
}
|
|
|
|
// Add all dirs to the current group that are within [t0, t0+tr].
|
|
for ; i < len(ds); i++ {
|
|
// Either the block falls into the next range or doesn't fit at all (checked above).
|
|
if ds[i].meta.MinTime < t0 || ds[i].meta.MaxTime > t0+tr {
|
|
break
|
|
}
|
|
group = append(group, ds[i])
|
|
}
|
|
|
|
if len(group) > 0 {
|
|
splitDirs = append(splitDirs, group)
|
|
}
|
|
}
|
|
|
|
return splitDirs
|
|
}
|
|
|
|
func compactBlockMetas(uid ulid.ULID, blocks ...*BlockMeta) *BlockMeta {
|
|
res := &BlockMeta{
|
|
ULID: uid,
|
|
MinTime: blocks[0].MinTime,
|
|
}
|
|
|
|
sources := map[ulid.ULID]struct{}{}
|
|
// For overlapping blocks, the Maxt can be
|
|
// in any block so we track it globally.
|
|
maxt := int64(math.MinInt64)
|
|
|
|
for _, b := range blocks {
|
|
if b.MaxTime > maxt {
|
|
maxt = b.MaxTime
|
|
}
|
|
if b.Compaction.Level > res.Compaction.Level {
|
|
res.Compaction.Level = b.Compaction.Level
|
|
}
|
|
for _, s := range b.Compaction.Sources {
|
|
sources[s] = struct{}{}
|
|
}
|
|
res.Compaction.Parents = append(res.Compaction.Parents, BlockDesc{
|
|
ULID: b.ULID,
|
|
MinTime: b.MinTime,
|
|
MaxTime: b.MaxTime,
|
|
})
|
|
}
|
|
res.Compaction.Level++
|
|
|
|
for s := range sources {
|
|
res.Compaction.Sources = append(res.Compaction.Sources, s)
|
|
}
|
|
sort.Slice(res.Compaction.Sources, func(i, j int) bool {
|
|
return res.Compaction.Sources[i].Compare(res.Compaction.Sources[j]) < 0
|
|
})
|
|
|
|
res.MaxTime = maxt
|
|
return res
|
|
}
|
|
|
|
// Compact creates a new block in the compactor's directory from the blocks in the
|
|
// provided directories.
|
|
func (c *LeveledCompactor) Compact(dest string, dirs []string, open []*Block) (uid ulid.ULID, err error) {
|
|
var (
|
|
blocks []BlockReader
|
|
bs []*Block
|
|
metas []*BlockMeta
|
|
uids []string
|
|
)
|
|
start := time.Now()
|
|
|
|
for _, d := range dirs {
|
|
meta, err := readMetaFile(d)
|
|
if err != nil {
|
|
return uid, err
|
|
}
|
|
|
|
var b *Block
|
|
|
|
// Use already open blocks if we can, to avoid
|
|
// having the index data in memory twice.
|
|
for _, o := range open {
|
|
if meta.ULID == o.Meta().ULID {
|
|
b = o
|
|
break
|
|
}
|
|
}
|
|
|
|
if b == nil {
|
|
var err error
|
|
b, err = OpenBlock(c.logger, d, c.chunkPool)
|
|
if err != nil {
|
|
return uid, err
|
|
}
|
|
defer b.Close()
|
|
}
|
|
|
|
metas = append(metas, meta)
|
|
blocks = append(blocks, b)
|
|
bs = append(bs, b)
|
|
uids = append(uids, meta.ULID.String())
|
|
}
|
|
|
|
entropy := rand.New(rand.NewSource(time.Now().UnixNano()))
|
|
uid = ulid.MustNew(ulid.Now(), entropy)
|
|
|
|
meta := compactBlockMetas(uid, metas...)
|
|
err = c.write(dest, meta, blocks...)
|
|
if err == nil {
|
|
if meta.Stats.NumSamples == 0 {
|
|
for _, b := range bs {
|
|
b.meta.Compaction.Deletable = true
|
|
if err = writeMetaFile(b.dir, &b.meta); err != nil {
|
|
level.Error(c.logger).Log(
|
|
"msg", "Failed to write 'Deletable' to meta file after compaction",
|
|
"ulid", b.meta.ULID,
|
|
)
|
|
}
|
|
}
|
|
uid = ulid.ULID{}
|
|
level.Info(c.logger).Log(
|
|
"msg", "compact blocks resulted in empty block",
|
|
"count", len(blocks),
|
|
"sources", fmt.Sprintf("%v", uids),
|
|
"duration", time.Since(start),
|
|
)
|
|
} else {
|
|
level.Info(c.logger).Log(
|
|
"msg", "compact blocks",
|
|
"count", len(blocks),
|
|
"mint", meta.MinTime,
|
|
"maxt", meta.MaxTime,
|
|
"ulid", meta.ULID,
|
|
"sources", fmt.Sprintf("%v", uids),
|
|
"duration", time.Since(start),
|
|
)
|
|
}
|
|
return uid, nil
|
|
}
|
|
|
|
var merr MultiError
|
|
merr.Add(err)
|
|
if err != context.Canceled {
|
|
for _, b := range bs {
|
|
if err := b.setCompactionFailed(); err != nil {
|
|
merr.Add(errors.Wrapf(err, "setting compaction failed for block: %s", b.Dir()))
|
|
}
|
|
}
|
|
}
|
|
|
|
return uid, merr
|
|
}
|
|
|
|
func (c *LeveledCompactor) Write(dest string, b BlockReader, mint, maxt int64, parent *BlockMeta) (ulid.ULID, error) {
|
|
start := time.Now()
|
|
|
|
entropy := rand.New(rand.NewSource(time.Now().UnixNano()))
|
|
uid := ulid.MustNew(ulid.Now(), entropy)
|
|
|
|
meta := &BlockMeta{
|
|
ULID: uid,
|
|
MinTime: mint,
|
|
MaxTime: maxt,
|
|
}
|
|
meta.Compaction.Level = 1
|
|
meta.Compaction.Sources = []ulid.ULID{uid}
|
|
|
|
if parent != nil {
|
|
meta.Compaction.Parents = []BlockDesc{
|
|
{ULID: parent.ULID, MinTime: parent.MinTime, MaxTime: parent.MaxTime},
|
|
}
|
|
}
|
|
|
|
err := c.write(dest, meta, b)
|
|
if err != nil {
|
|
return uid, err
|
|
}
|
|
|
|
if meta.Stats.NumSamples == 0 {
|
|
return ulid.ULID{}, nil
|
|
}
|
|
|
|
level.Info(c.logger).Log(
|
|
"msg", "write block",
|
|
"mint", meta.MinTime,
|
|
"maxt", meta.MaxTime,
|
|
"ulid", meta.ULID,
|
|
"duration", time.Since(start),
|
|
)
|
|
return uid, nil
|
|
}
|
|
|
|
// instrumentedChunkWriter is used for level 1 compactions to record statistics
|
|
// about compacted chunks.
|
|
type instrumentedChunkWriter struct {
|
|
ChunkWriter
|
|
|
|
size prometheus.Histogram
|
|
samples prometheus.Histogram
|
|
trange prometheus.Histogram
|
|
}
|
|
|
|
func (w *instrumentedChunkWriter) WriteChunks(chunks ...chunks.Meta) error {
|
|
for _, c := range chunks {
|
|
w.size.Observe(float64(len(c.Chunk.Bytes())))
|
|
w.samples.Observe(float64(c.Chunk.NumSamples()))
|
|
w.trange.Observe(float64(c.MaxTime - c.MinTime))
|
|
}
|
|
return w.ChunkWriter.WriteChunks(chunks...)
|
|
}
|
|
|
|
// write creates a new block that is the union of the provided blocks into dir.
|
|
// It cleans up all files of the old blocks after completing successfully.
|
|
func (c *LeveledCompactor) write(dest string, meta *BlockMeta, blocks ...BlockReader) (err error) {
|
|
dir := filepath.Join(dest, meta.ULID.String())
|
|
tmp := dir + ".tmp"
|
|
var closers []io.Closer
|
|
defer func(t time.Time) {
|
|
var merr MultiError
|
|
merr.Add(err)
|
|
merr.Add(closeAll(closers))
|
|
err = merr.Err()
|
|
|
|
// RemoveAll returns no error when tmp doesn't exist so it is safe to always run it.
|
|
if err := os.RemoveAll(tmp); err != nil {
|
|
level.Error(c.logger).Log("msg", "removed tmp folder after failed compaction", "err", err.Error())
|
|
}
|
|
if err != nil {
|
|
c.metrics.failed.Inc()
|
|
}
|
|
c.metrics.ran.Inc()
|
|
c.metrics.duration.Observe(time.Since(t).Seconds())
|
|
}(time.Now())
|
|
|
|
if err = os.RemoveAll(tmp); err != nil {
|
|
return err
|
|
}
|
|
|
|
if err = os.MkdirAll(tmp, 0777); err != nil {
|
|
return err
|
|
}
|
|
|
|
// Populate chunk and index files into temporary directory with
|
|
// data of all blocks.
|
|
var chunkw ChunkWriter
|
|
|
|
chunkw, err = chunks.NewWriter(chunkDir(tmp))
|
|
if err != nil {
|
|
return errors.Wrap(err, "open chunk writer")
|
|
}
|
|
closers = append(closers, chunkw)
|
|
// Record written chunk sizes on level 1 compactions.
|
|
if meta.Compaction.Level == 1 {
|
|
chunkw = &instrumentedChunkWriter{
|
|
ChunkWriter: chunkw,
|
|
size: c.metrics.chunkSize,
|
|
samples: c.metrics.chunkSamples,
|
|
trange: c.metrics.chunkRange,
|
|
}
|
|
}
|
|
|
|
indexw, err := index.NewWriter(filepath.Join(tmp, indexFilename))
|
|
if err != nil {
|
|
return errors.Wrap(err, "open index writer")
|
|
}
|
|
closers = append(closers, indexw)
|
|
|
|
if err := c.populateBlock(blocks, meta, indexw, chunkw); err != nil {
|
|
return errors.Wrap(err, "write compaction")
|
|
}
|
|
|
|
select {
|
|
case <-c.ctx.Done():
|
|
return c.ctx.Err()
|
|
default:
|
|
}
|
|
|
|
// We are explicitly closing them here to check for error even
|
|
// though these are covered under defer. This is because in Windows,
|
|
// you cannot delete these unless they are closed and the defer is to
|
|
// make sure they are closed if the function exits due to an error above.
|
|
var merr MultiError
|
|
for _, w := range closers {
|
|
merr.Add(w.Close())
|
|
}
|
|
closers = closers[:0] // Avoid closing the writers twice in the defer.
|
|
if merr.Err() != nil {
|
|
return merr.Err()
|
|
}
|
|
|
|
// Populated block is empty, so exit early.
|
|
if meta.Stats.NumSamples == 0 {
|
|
return nil
|
|
}
|
|
|
|
if err = writeMetaFile(tmp, meta); err != nil {
|
|
return errors.Wrap(err, "write merged meta")
|
|
}
|
|
|
|
// Create an empty tombstones file.
|
|
if err := writeTombstoneFile(tmp, newMemTombstones()); err != nil {
|
|
return errors.Wrap(err, "write new tombstones file")
|
|
}
|
|
|
|
df, err := fileutil.OpenDir(tmp)
|
|
if err != nil {
|
|
return errors.Wrap(err, "open temporary block dir")
|
|
}
|
|
defer func() {
|
|
if df != nil {
|
|
df.Close()
|
|
}
|
|
}()
|
|
|
|
if err := fileutil.Fsync(df); err != nil {
|
|
return errors.Wrap(err, "sync temporary dir file")
|
|
}
|
|
|
|
// Close temp dir before rename block dir (for windows platform).
|
|
if err = df.Close(); err != nil {
|
|
return errors.Wrap(err, "close temporary dir")
|
|
}
|
|
df = nil
|
|
|
|
// Block successfully written, make visible and remove old ones.
|
|
if err := renameFile(tmp, dir); err != nil {
|
|
return errors.Wrap(err, "rename block dir")
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
// populateBlock fills the index and chunk writers with new data gathered as the union
|
|
// of the provided blocks. It returns meta information for the new block.
|
|
// It expects sorted blocks input by mint.
|
|
func (c *LeveledCompactor) populateBlock(blocks []BlockReader, meta *BlockMeta, indexw IndexWriter, chunkw ChunkWriter) (err error) {
|
|
if len(blocks) == 0 {
|
|
return errors.New("cannot populate block from no readers")
|
|
}
|
|
|
|
var (
|
|
set ChunkSeriesSet
|
|
allSymbols = make(map[string]struct{}, 1<<16)
|
|
closers = []io.Closer{}
|
|
overlapping bool
|
|
)
|
|
defer func() {
|
|
var merr MultiError
|
|
merr.Add(err)
|
|
merr.Add(closeAll(closers))
|
|
err = merr.Err()
|
|
c.metrics.populatingBlocks.Set(0)
|
|
}()
|
|
c.metrics.populatingBlocks.Set(1)
|
|
|
|
globalMaxt := blocks[0].MaxTime()
|
|
for i, b := range blocks {
|
|
select {
|
|
case <-c.ctx.Done():
|
|
return c.ctx.Err()
|
|
default:
|
|
}
|
|
|
|
if !overlapping {
|
|
if i > 0 && b.MinTime() < globalMaxt {
|
|
c.metrics.overlappingBlocks.Inc()
|
|
overlapping = true
|
|
level.Warn(c.logger).Log("msg", "found overlapping blocks during compaction", "ulid", meta.ULID)
|
|
}
|
|
if b.MaxTime() > globalMaxt {
|
|
globalMaxt = b.MaxTime()
|
|
}
|
|
}
|
|
|
|
indexr, err := b.Index()
|
|
if err != nil {
|
|
return errors.Wrapf(err, "open index reader for block %s", b)
|
|
}
|
|
closers = append(closers, indexr)
|
|
|
|
chunkr, err := b.Chunks()
|
|
if err != nil {
|
|
return errors.Wrapf(err, "open chunk reader for block %s", b)
|
|
}
|
|
closers = append(closers, chunkr)
|
|
|
|
tombsr, err := b.Tombstones()
|
|
if err != nil {
|
|
return errors.Wrapf(err, "open tombstone reader for block %s", b)
|
|
}
|
|
closers = append(closers, tombsr)
|
|
|
|
symbols, err := indexr.Symbols()
|
|
if err != nil {
|
|
return errors.Wrap(err, "read symbols")
|
|
}
|
|
for s := range symbols {
|
|
allSymbols[s] = struct{}{}
|
|
}
|
|
|
|
all, err := indexr.Postings(index.AllPostingsKey())
|
|
if err != nil {
|
|
return err
|
|
}
|
|
all = indexr.SortedPostings(all)
|
|
|
|
s := newCompactionSeriesSet(indexr, chunkr, tombsr, all)
|
|
|
|
if i == 0 {
|
|
set = s
|
|
continue
|
|
}
|
|
set, err = newCompactionMerger(set, s)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
}
|
|
|
|
// We fully rebuild the postings list index from merged series.
|
|
var (
|
|
postings = index.NewMemPostings()
|
|
values = map[string]stringset{}
|
|
i = uint64(0)
|
|
)
|
|
|
|
if err := indexw.AddSymbols(allSymbols); err != nil {
|
|
return errors.Wrap(err, "add symbols")
|
|
}
|
|
|
|
for set.Next() {
|
|
select {
|
|
case <-c.ctx.Done():
|
|
return c.ctx.Err()
|
|
default:
|
|
}
|
|
|
|
lset, chks, dranges := set.At() // The chunks here are not fully deleted.
|
|
if overlapping {
|
|
// If blocks are overlapping, it is possible to have unsorted chunks.
|
|
sort.Slice(chks, func(i, j int) bool {
|
|
return chks[i].MinTime < chks[j].MinTime
|
|
})
|
|
}
|
|
|
|
// Skip the series with all deleted chunks.
|
|
if len(chks) == 0 {
|
|
continue
|
|
}
|
|
|
|
for i, chk := range chks {
|
|
if chk.MinTime < meta.MinTime || chk.MaxTime > meta.MaxTime {
|
|
return errors.Errorf("found chunk with minTime: %d maxTime: %d outside of compacted minTime: %d maxTime: %d",
|
|
chk.MinTime, chk.MaxTime, meta.MinTime, meta.MaxTime)
|
|
}
|
|
|
|
if len(dranges) > 0 {
|
|
// Re-encode the chunk to not have deleted values.
|
|
if !chk.OverlapsClosedInterval(dranges[0].Mint, dranges[len(dranges)-1].Maxt) {
|
|
continue
|
|
}
|
|
newChunk := chunkenc.NewXORChunk()
|
|
app, err := newChunk.Appender()
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
it := &deletedIterator{it: chk.Chunk.Iterator(), intervals: dranges}
|
|
for it.Next() {
|
|
ts, v := it.At()
|
|
app.Append(ts, v)
|
|
}
|
|
|
|
chks[i].Chunk = newChunk
|
|
}
|
|
}
|
|
|
|
mergedChks := chks
|
|
if overlapping {
|
|
mergedChks, err = chunks.MergeOverlappingChunks(chks)
|
|
if err != nil {
|
|
return errors.Wrap(err, "merge overlapping chunks")
|
|
}
|
|
}
|
|
if err := chunkw.WriteChunks(mergedChks...); err != nil {
|
|
return errors.Wrap(err, "write chunks")
|
|
}
|
|
|
|
if err := indexw.AddSeries(i, lset, mergedChks...); err != nil {
|
|
return errors.Wrap(err, "add series")
|
|
}
|
|
|
|
meta.Stats.NumChunks += uint64(len(mergedChks))
|
|
meta.Stats.NumSeries++
|
|
for _, chk := range mergedChks {
|
|
meta.Stats.NumSamples += uint64(chk.Chunk.NumSamples())
|
|
}
|
|
|
|
for _, chk := range mergedChks {
|
|
if err := c.chunkPool.Put(chk.Chunk); err != nil {
|
|
return errors.Wrap(err, "put chunk")
|
|
}
|
|
}
|
|
|
|
for _, l := range lset {
|
|
valset, ok := values[l.Name]
|
|
if !ok {
|
|
valset = stringset{}
|
|
values[l.Name] = valset
|
|
}
|
|
valset.set(l.Value)
|
|
}
|
|
postings.Add(i, lset)
|
|
|
|
i++
|
|
}
|
|
if set.Err() != nil {
|
|
return errors.Wrap(set.Err(), "iterate compaction set")
|
|
}
|
|
|
|
s := make([]string, 0, 256)
|
|
for n, v := range values {
|
|
s = s[:0]
|
|
|
|
for x := range v {
|
|
s = append(s, x)
|
|
}
|
|
if err := indexw.WriteLabelIndex([]string{n}, s); err != nil {
|
|
return errors.Wrap(err, "write label index")
|
|
}
|
|
}
|
|
|
|
for _, l := range postings.SortedKeys() {
|
|
if err := indexw.WritePostings(l.Name, l.Value, postings.Get(l.Name, l.Value)); err != nil {
|
|
return errors.Wrap(err, "write postings")
|
|
}
|
|
}
|
|
return nil
|
|
}
|
|
|
|
type compactionSeriesSet struct {
|
|
p index.Postings
|
|
index IndexReader
|
|
chunks ChunkReader
|
|
tombstones TombstoneReader
|
|
|
|
l labels.Labels
|
|
c []chunks.Meta
|
|
intervals Intervals
|
|
err error
|
|
}
|
|
|
|
func newCompactionSeriesSet(i IndexReader, c ChunkReader, t TombstoneReader, p index.Postings) *compactionSeriesSet {
|
|
return &compactionSeriesSet{
|
|
index: i,
|
|
chunks: c,
|
|
tombstones: t,
|
|
p: p,
|
|
}
|
|
}
|
|
|
|
func (c *compactionSeriesSet) Next() bool {
|
|
if !c.p.Next() {
|
|
return false
|
|
}
|
|
var err error
|
|
|
|
c.intervals, err = c.tombstones.Get(c.p.At())
|
|
if err != nil {
|
|
c.err = errors.Wrap(err, "get tombstones")
|
|
return false
|
|
}
|
|
|
|
if err = c.index.Series(c.p.At(), &c.l, &c.c); err != nil {
|
|
c.err = errors.Wrapf(err, "get series %d", c.p.At())
|
|
return false
|
|
}
|
|
|
|
// Remove completely deleted chunks.
|
|
if len(c.intervals) > 0 {
|
|
chks := make([]chunks.Meta, 0, len(c.c))
|
|
for _, chk := range c.c {
|
|
if !(Interval{chk.MinTime, chk.MaxTime}.isSubrange(c.intervals)) {
|
|
chks = append(chks, chk)
|
|
}
|
|
}
|
|
|
|
c.c = chks
|
|
}
|
|
|
|
for i := range c.c {
|
|
chk := &c.c[i]
|
|
|
|
chk.Chunk, err = c.chunks.Chunk(chk.Ref)
|
|
if err != nil {
|
|
c.err = errors.Wrapf(err, "chunk %d not found", chk.Ref)
|
|
return false
|
|
}
|
|
}
|
|
|
|
return true
|
|
}
|
|
|
|
func (c *compactionSeriesSet) Err() error {
|
|
if c.err != nil {
|
|
return c.err
|
|
}
|
|
return c.p.Err()
|
|
}
|
|
|
|
func (c *compactionSeriesSet) At() (labels.Labels, []chunks.Meta, Intervals) {
|
|
return c.l, c.c, c.intervals
|
|
}
|
|
|
|
type compactionMerger struct {
|
|
a, b ChunkSeriesSet
|
|
|
|
aok, bok bool
|
|
l labels.Labels
|
|
c []chunks.Meta
|
|
intervals Intervals
|
|
}
|
|
|
|
func newCompactionMerger(a, b ChunkSeriesSet) (*compactionMerger, error) {
|
|
c := &compactionMerger{
|
|
a: a,
|
|
b: b,
|
|
}
|
|
// Initialize first elements of both sets as Next() needs
|
|
// one element look-ahead.
|
|
c.aok = c.a.Next()
|
|
c.bok = c.b.Next()
|
|
|
|
return c, c.Err()
|
|
}
|
|
|
|
func (c *compactionMerger) compare() int {
|
|
if !c.aok {
|
|
return 1
|
|
}
|
|
if !c.bok {
|
|
return -1
|
|
}
|
|
a, _, _ := c.a.At()
|
|
b, _, _ := c.b.At()
|
|
return labels.Compare(a, b)
|
|
}
|
|
|
|
func (c *compactionMerger) Next() bool {
|
|
if !c.aok && !c.bok || c.Err() != nil {
|
|
return false
|
|
}
|
|
// While advancing child iterators the memory used for labels and chunks
|
|
// may be reused. When picking a series we have to store the result.
|
|
var lset labels.Labels
|
|
var chks []chunks.Meta
|
|
|
|
d := c.compare()
|
|
if d > 0 {
|
|
lset, chks, c.intervals = c.b.At()
|
|
c.l = append(c.l[:0], lset...)
|
|
c.c = append(c.c[:0], chks...)
|
|
|
|
c.bok = c.b.Next()
|
|
} else if d < 0 {
|
|
lset, chks, c.intervals = c.a.At()
|
|
c.l = append(c.l[:0], lset...)
|
|
c.c = append(c.c[:0], chks...)
|
|
|
|
c.aok = c.a.Next()
|
|
} else {
|
|
// Both sets contain the current series. Chain them into a single one.
|
|
l, ca, ra := c.a.At()
|
|
_, cb, rb := c.b.At()
|
|
|
|
for _, r := range rb {
|
|
ra = ra.add(r)
|
|
}
|
|
|
|
c.l = append(c.l[:0], l...)
|
|
c.c = append(append(c.c[:0], ca...), cb...)
|
|
c.intervals = ra
|
|
|
|
c.aok = c.a.Next()
|
|
c.bok = c.b.Next()
|
|
}
|
|
|
|
return true
|
|
}
|
|
|
|
func (c *compactionMerger) Err() error {
|
|
if c.a.Err() != nil {
|
|
return c.a.Err()
|
|
}
|
|
return c.b.Err()
|
|
}
|
|
|
|
func (c *compactionMerger) At() (labels.Labels, []chunks.Meta, Intervals) {
|
|
return c.l, c.c, c.intervals
|
|
}
|
|
|
|
func renameFile(from, to string) error {
|
|
if err := os.RemoveAll(to); err != nil {
|
|
return err
|
|
}
|
|
if err := os.Rename(from, to); err != nil {
|
|
return err
|
|
}
|
|
|
|
// Directory was renamed; sync parent dir to persist rename.
|
|
pdir, err := fileutil.OpenDir(filepath.Dir(to))
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
if err = fileutil.Fsync(pdir); err != nil {
|
|
pdir.Close()
|
|
return err
|
|
}
|
|
return pdir.Close()
|
|
}
|