prometheus/tsdb/chunkenc/xor.go
Ganesh Vernekar f4d3af73f0
Query histograms from TSDB and unit test for append+query (#9022)
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
2021-06-30 20:18:13 +05:30

470 lines
11 KiB
Go

// Copyright 2017 The Prometheus Authors
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
// The code in this file was largely written by Damian Gryski as part of
// https://github.com/dgryski/go-tsz and published under the license below.
// It was modified to accommodate reading from byte slices without modifying
// the underlying bytes, which would panic when reading from mmap'd
// read-only byte slices.
// Copyright (c) 2015,2016 Damian Gryski <damian@gryski.com>
// All rights reserved.
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
// * Redistributions of source code must retain the above copyright notice,
// this list of conditions and the following disclaimer.
//
// * Redistributions in binary form must reproduce the above copyright notice,
// this list of conditions and the following disclaimer in the documentation
// and/or other materials provided with the distribution.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
// DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
// OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
// OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
package chunkenc
import (
"encoding/binary"
"math"
"math/bits"
"github.com/prometheus/prometheus/pkg/histogram"
)
const (
chunkCompactCapacityThreshold = 32
)
// XORChunk holds XOR encoded sample data.
type XORChunk struct {
b bstream
}
// NewXORChunk returns a new chunk with XOR encoding of the given size.
func NewXORChunk() *XORChunk {
b := make([]byte, 2, 128)
return &XORChunk{b: bstream{stream: b, count: 0}}
}
// Encoding returns the encoding type.
func (c *XORChunk) Encoding() Encoding {
return EncXOR
}
// Bytes returns the underlying byte slice of the chunk.
func (c *XORChunk) Bytes() []byte {
return c.b.bytes()
}
// NumSamples returns the number of samples in the chunk.
func (c *XORChunk) NumSamples() int {
return int(binary.BigEndian.Uint16(c.Bytes()))
}
func (c *XORChunk) Compact() {
if l := len(c.b.stream); cap(c.b.stream) > l+chunkCompactCapacityThreshold {
buf := make([]byte, l)
copy(buf, c.b.stream)
c.b.stream = buf
}
}
// Appender implements the Chunk interface.
func (c *XORChunk) Appender() (Appender, error) {
it := c.iterator(nil)
// To get an appender we must know the state it would have if we had
// appended all existing data from scratch.
// We iterate through the end and populate via the iterator's state.
for it.Next() {
}
if err := it.Err(); err != nil {
return nil, err
}
a := &xorAppender{
b: &c.b,
t: it.t,
v: it.val,
tDelta: it.tDelta,
leading: it.leading,
trailing: it.trailing,
}
if binary.BigEndian.Uint16(a.b.bytes()) == 0 {
a.leading = 0xff
}
return a, nil
}
func (c *XORChunk) iterator(it Iterator) *xorIterator {
// Should iterators guarantee to act on a copy of the data so it doesn't lock append?
// When using striped locks to guard access to chunks, probably yes.
// Could only copy data if the chunk is not completed yet.
if xorIter, ok := it.(*xorIterator); ok {
xorIter.Reset(c.b.bytes())
return xorIter
}
return &xorIterator{
// The first 2 bytes contain chunk headers.
// We skip that for actual samples.
br: newBReader(c.b.bytes()[2:]),
numTotal: binary.BigEndian.Uint16(c.b.bytes()),
t: math.MinInt64,
}
}
// Iterator implements the Chunk interface.
func (c *XORChunk) Iterator(it Iterator) Iterator {
return c.iterator(it)
}
type xorAppender struct {
b *bstream
t int64
v float64
tDelta uint64
leading uint8
trailing uint8
}
func (a *xorAppender) AppendHistogram(t int64, h histogram.SparseHistogram) {
panic("cannot call xorAppender.AppendHistogram().")
}
func (a *xorAppender) Append(t int64, v float64) {
var tDelta uint64
num := binary.BigEndian.Uint16(a.b.bytes())
if num == 0 {
buf := make([]byte, binary.MaxVarintLen64)
for _, b := range buf[:binary.PutVarint(buf, t)] {
a.b.writeByte(b)
}
a.b.writeBits(math.Float64bits(v), 64)
} else if num == 1 {
tDelta = uint64(t - a.t)
buf := make([]byte, binary.MaxVarintLen64)
for _, b := range buf[:binary.PutUvarint(buf, tDelta)] {
a.b.writeByte(b)
}
a.writeVDelta(v)
} else {
tDelta = uint64(t - a.t)
dod := int64(tDelta - a.tDelta)
// Gorilla has a max resolution of seconds, Prometheus milliseconds.
// Thus we use higher value range steps with larger bit size.
switch {
case dod == 0:
a.b.writeBit(zero)
case bitRange(dod, 14):
a.b.writeBits(0x02, 2) // '10'
a.b.writeBits(uint64(dod), 14)
case bitRange(dod, 17):
a.b.writeBits(0x06, 3) // '110'
a.b.writeBits(uint64(dod), 17)
case bitRange(dod, 20):
a.b.writeBits(0x0e, 4) // '1110'
a.b.writeBits(uint64(dod), 20)
default:
a.b.writeBits(0x0f, 4) // '1111'
a.b.writeBits(uint64(dod), 64)
}
a.writeVDelta(v)
}
a.t = t
a.v = v
binary.BigEndian.PutUint16(a.b.bytes(), num+1)
a.tDelta = tDelta
}
func bitRange(x int64, nbits uint8) bool {
return -((1<<(nbits-1))-1) <= x && x <= 1<<(nbits-1)
}
func (a *xorAppender) writeVDelta(v float64) {
vDelta := math.Float64bits(v) ^ math.Float64bits(a.v)
if vDelta == 0 {
a.b.writeBit(zero)
return
}
a.b.writeBit(one)
leading := uint8(bits.LeadingZeros64(vDelta))
trailing := uint8(bits.TrailingZeros64(vDelta))
// Clamp number of leading zeros to avoid overflow when encoding.
if leading >= 32 {
leading = 31
}
if a.leading != 0xff && leading >= a.leading && trailing >= a.trailing {
a.b.writeBit(zero)
a.b.writeBits(vDelta>>a.trailing, 64-int(a.leading)-int(a.trailing))
} else {
a.leading, a.trailing = leading, trailing
a.b.writeBit(one)
a.b.writeBits(uint64(leading), 5)
// Note that if leading == trailing == 0, then sigbits == 64. But that value doesn't actually fit into the 6 bits we have.
// Luckily, we never need to encode 0 significant bits, since that would put us in the other case (vdelta == 0).
// So instead we write out a 0 and adjust it back to 64 on unpacking.
sigbits := 64 - leading - trailing
a.b.writeBits(uint64(sigbits), 6)
a.b.writeBits(vDelta>>trailing, int(sigbits))
}
}
type xorIterator struct {
br bstreamReader
numTotal uint16
numRead uint16
t int64
val float64
leading uint8
trailing uint8
tDelta uint64
err error
}
func (it *xorIterator) Seek(t int64) bool {
if it.err != nil {
return false
}
for t > it.t || it.numRead == 0 {
if !it.Next() {
return false
}
}
return true
}
func (it *xorIterator) At() (int64, float64) {
return it.t, it.val
}
func (it *xorIterator) AtHistogram() (int64, histogram.SparseHistogram) {
panic("cannot call xorIterator.AtHistogram().")
}
func (it *xorIterator) ChunkEncoding() Encoding {
return EncXOR
}
func (it *xorIterator) Err() error {
return it.err
}
func (it *xorIterator) Reset(b []byte) {
// The first 2 bytes contain chunk headers.
// We skip that for actual samples.
it.br = newBReader(b[2:])
it.numTotal = binary.BigEndian.Uint16(b)
it.numRead = 0
it.t = 0
it.val = 0
it.leading = 0
it.trailing = 0
it.tDelta = 0
it.err = nil
}
func (it *xorIterator) Next() bool {
if it.err != nil || it.numRead == it.numTotal {
return false
}
if it.numRead == 0 {
t, err := binary.ReadVarint(&it.br)
if err != nil {
it.err = err
return false
}
v, err := it.br.readBits(64)
if err != nil {
it.err = err
return false
}
it.t = t
it.val = math.Float64frombits(v)
it.numRead++
return true
}
if it.numRead == 1 {
tDelta, err := binary.ReadUvarint(&it.br)
if err != nil {
it.err = err
return false
}
it.tDelta = tDelta
it.t = it.t + int64(it.tDelta)
return it.readValue()
}
var d byte
// read delta-of-delta
for i := 0; i < 4; i++ {
d <<= 1
bit, err := it.br.readBitFast()
if err != nil {
bit, err = it.br.readBit()
}
if err != nil {
it.err = err
return false
}
if bit == zero {
break
}
d |= 1
}
var sz uint8
var dod int64
switch d {
case 0x00:
// dod == 0
case 0x02:
sz = 14
case 0x06:
sz = 17
case 0x0e:
sz = 20
case 0x0f:
// Do not use fast because it's very unlikely it will succeed.
bits, err := it.br.readBits(64)
if err != nil {
it.err = err
return false
}
dod = int64(bits)
}
if sz != 0 {
bits, err := it.br.readBitsFast(sz)
if err != nil {
bits, err = it.br.readBits(sz)
}
if err != nil {
it.err = err
return false
}
if bits > (1 << (sz - 1)) {
// or something
bits = bits - (1 << sz)
}
dod = int64(bits)
}
it.tDelta = uint64(int64(it.tDelta) + dod)
it.t = it.t + int64(it.tDelta)
return it.readValue()
}
func (it *xorIterator) readValue() bool {
bit, err := it.br.readBitFast()
if err != nil {
bit, err = it.br.readBit()
}
if err != nil {
it.err = err
return false
}
if bit == zero {
// it.val = it.val
} else {
bit, err := it.br.readBitFast()
if err != nil {
bit, err = it.br.readBit()
}
if err != nil {
it.err = err
return false
}
if bit == zero {
// reuse leading/trailing zero bits
// it.leading, it.trailing = it.leading, it.trailing
} else {
bits, err := it.br.readBitsFast(5)
if err != nil {
bits, err = it.br.readBits(5)
}
if err != nil {
it.err = err
return false
}
it.leading = uint8(bits)
bits, err = it.br.readBitsFast(6)
if err != nil {
bits, err = it.br.readBits(6)
}
if err != nil {
it.err = err
return false
}
mbits := uint8(bits)
// 0 significant bits here means we overflowed and we actually need 64; see comment in encoder
if mbits == 0 {
mbits = 64
}
it.trailing = 64 - it.leading - mbits
}
mbits := 64 - it.leading - it.trailing
bits, err := it.br.readBitsFast(mbits)
if err != nil {
bits, err = it.br.readBits(mbits)
}
if err != nil {
it.err = err
return false
}
vbits := math.Float64bits(it.val)
vbits ^= bits << it.trailing
it.val = math.Float64frombits(vbits)
}
it.numRead++
return true
}