mirror of
https://github.com/prometheus/prometheus.git
synced 2024-12-27 14:39:40 -08:00
c806262206
* Fix chunks.HeadReadWriter: maxt of the files are not set Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
820 lines
24 KiB
Go
820 lines
24 KiB
Go
// Copyright 2020 The Prometheus Authors
|
|
// Licensed under the Apache License, Version 2.0 (the "License");
|
|
// you may not use this file except in compliance with the License.
|
|
// You may obtain a copy of the License at
|
|
//
|
|
// http://www.apache.org/licenses/LICENSE-2.0
|
|
//
|
|
// Unless required by applicable law or agreed to in writing, software
|
|
// distributed under the License is distributed on an "AS IS" BASIS,
|
|
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
// See the License for the specific language governing permissions and
|
|
// limitations under the License.
|
|
|
|
package chunks
|
|
|
|
import (
|
|
"bufio"
|
|
"bytes"
|
|
"encoding/binary"
|
|
"hash"
|
|
"io"
|
|
"io/ioutil"
|
|
"os"
|
|
"path/filepath"
|
|
"sort"
|
|
"strconv"
|
|
"sync"
|
|
|
|
"github.com/pkg/errors"
|
|
"github.com/prometheus/prometheus/tsdb/chunkenc"
|
|
tsdb_errors "github.com/prometheus/prometheus/tsdb/errors"
|
|
"github.com/prometheus/prometheus/tsdb/fileutil"
|
|
"go.uber.org/atomic"
|
|
)
|
|
|
|
// Head chunk file header fields constants.
|
|
const (
|
|
// MagicHeadChunks is 4 bytes at the beginning of a head chunk file.
|
|
MagicHeadChunks = 0x0130BC91
|
|
|
|
headChunksFormatV1 = 1
|
|
writeBufferSize = 4 * 1024 * 1024 // 4 MiB.
|
|
)
|
|
|
|
var (
|
|
// ErrChunkDiskMapperClosed returned by any method indicates
|
|
// that the ChunkDiskMapper was closed.
|
|
ErrChunkDiskMapperClosed = errors.New("ChunkDiskMapper closed")
|
|
)
|
|
|
|
const (
|
|
// MintMaxtSize is the size of the mint/maxt for head chunk file and chunks.
|
|
MintMaxtSize = 8
|
|
// SeriesRefSize is the size of series reference on disk.
|
|
SeriesRefSize = 8
|
|
// HeadChunkFileHeaderSize is the total size of the header for the head chunk file.
|
|
HeadChunkFileHeaderSize = SegmentHeaderSize
|
|
// MaxHeadChunkFileSize is the max size of a head chunk file.
|
|
MaxHeadChunkFileSize = 128 * 1024 * 1024 // 128 MiB.
|
|
// CRCSize is the size of crc32 sum on disk.
|
|
CRCSize = 4
|
|
// MaxHeadChunkMetaSize is the max size of an mmapped chunks minus the chunks data.
|
|
// Max because the uvarint size can be smaller.
|
|
MaxHeadChunkMetaSize = SeriesRefSize + 2*MintMaxtSize + ChunksFormatVersionSize + MaxChunkLengthFieldSize + CRCSize
|
|
)
|
|
|
|
// corruptionErr is an error that's returned when corruption is encountered.
|
|
type CorruptionErr struct {
|
|
Dir string
|
|
FileIndex int
|
|
Err error
|
|
}
|
|
|
|
func (e *CorruptionErr) Error() string {
|
|
return errors.Wrapf(e.Err, "corruption in head chunk file %s", segmentFile(e.Dir, e.FileIndex)).Error()
|
|
}
|
|
|
|
// ChunkDiskMapper is for writing the Head block chunks to the disk
|
|
// and access chunks via mmapped file.
|
|
type ChunkDiskMapper struct {
|
|
curFileNumBytes atomic.Int64 // Bytes written in current open file.
|
|
|
|
/// Writer.
|
|
dir *os.File
|
|
|
|
curFile *os.File // File being written to.
|
|
curFileSequence int // Index of current open file being appended to.
|
|
curFileMaxt int64 // Used for the size retention.
|
|
|
|
byteBuf [MaxHeadChunkMetaSize]byte // Buffer used to write the header of the chunk.
|
|
chkWriter *bufio.Writer // Writer for the current open file.
|
|
crc32 hash.Hash
|
|
writePathMtx sync.Mutex
|
|
|
|
/// Reader.
|
|
// The int key in the map is the file number on the disk.
|
|
mmappedChunkFiles map[int]*mmappedChunkFile // Contains the m-mapped files for each chunk file mapped with its index.
|
|
closers map[int]io.Closer // Closers for resources behind the byte slices.
|
|
readPathMtx sync.RWMutex // Mutex used to protect the above 2 maps.
|
|
pool chunkenc.Pool // This is used when fetching a chunk from the disk to allocate a chunk.
|
|
|
|
// Writer and Reader.
|
|
// We flush chunks to disk in batches. Hence, we store them in this buffer
|
|
// from which chunks are served till they are flushed and are ready for m-mapping.
|
|
chunkBuffer *chunkBuffer
|
|
|
|
// The total size of bytes in the closed files.
|
|
// Needed to calculate the total size of all segments on disk.
|
|
size atomic.Int64
|
|
|
|
// If 'true', it indicated that the maxt of all the on-disk files were set
|
|
// after iterating through all the chunks in those files.
|
|
fileMaxtSet bool
|
|
|
|
closed bool
|
|
}
|
|
|
|
type mmappedChunkFile struct {
|
|
byteSlice ByteSlice
|
|
maxt int64
|
|
}
|
|
|
|
// NewChunkDiskMapper returns a new writer against the given directory
|
|
// using the default head chunk file duration.
|
|
// NOTE: 'IterateAllChunks' method needs to be called at least once after creating ChunkDiskMapper
|
|
// to set the maxt of all the file.
|
|
func NewChunkDiskMapper(dir string, pool chunkenc.Pool) (*ChunkDiskMapper, error) {
|
|
if err := os.MkdirAll(dir, 0777); err != nil {
|
|
return nil, err
|
|
}
|
|
dirFile, err := fileutil.OpenDir(dir)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
m := &ChunkDiskMapper{
|
|
dir: dirFile,
|
|
pool: pool,
|
|
crc32: newCRC32(),
|
|
chunkBuffer: newChunkBuffer(),
|
|
}
|
|
|
|
if m.pool == nil {
|
|
m.pool = chunkenc.NewPool()
|
|
}
|
|
|
|
return m, m.openMMapFiles()
|
|
}
|
|
|
|
func (cdm *ChunkDiskMapper) openMMapFiles() (returnErr error) {
|
|
cdm.mmappedChunkFiles = map[int]*mmappedChunkFile{}
|
|
cdm.closers = map[int]io.Closer{}
|
|
defer func() {
|
|
if returnErr != nil {
|
|
var merr tsdb_errors.MultiError
|
|
merr.Add(returnErr)
|
|
merr.Add(closeAllFromMap(cdm.closers))
|
|
returnErr = merr.Err()
|
|
|
|
cdm.mmappedChunkFiles = nil
|
|
cdm.closers = nil
|
|
}
|
|
}()
|
|
|
|
files, err := listChunkFiles(cdm.dir.Name())
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
chkFileIndices := make([]int, 0, len(files))
|
|
for seq, fn := range files {
|
|
f, err := fileutil.OpenMmapFile(fn)
|
|
if err != nil {
|
|
return errors.Wrapf(err, "mmap files, file: %s", fn)
|
|
}
|
|
cdm.closers[seq] = f
|
|
cdm.mmappedChunkFiles[seq] = &mmappedChunkFile{byteSlice: realByteSlice(f.Bytes())}
|
|
chkFileIndices = append(chkFileIndices, seq)
|
|
}
|
|
|
|
cdm.size.Store(int64(0))
|
|
|
|
// Check for gaps in the files.
|
|
sort.Ints(chkFileIndices)
|
|
if len(chkFileIndices) == 0 {
|
|
return nil
|
|
}
|
|
lastSeq := chkFileIndices[0]
|
|
for _, seq := range chkFileIndices[1:] {
|
|
if seq != lastSeq+1 {
|
|
return errors.Errorf("found unsequential head chunk files %s (index: %d) and %s (index: %d)", files[lastSeq], lastSeq, files[seq], seq)
|
|
}
|
|
lastSeq = seq
|
|
}
|
|
|
|
for i, b := range cdm.mmappedChunkFiles {
|
|
if b.byteSlice.Len() < HeadChunkFileHeaderSize {
|
|
return errors.Wrapf(errInvalidSize, "%s: invalid head chunk file header", files[i])
|
|
}
|
|
// Verify magic number.
|
|
if m := binary.BigEndian.Uint32(b.byteSlice.Range(0, MagicChunksSize)); m != MagicHeadChunks {
|
|
return errors.Errorf("%s: invalid magic number %x", files[i], m)
|
|
}
|
|
|
|
// Verify chunk format version.
|
|
if v := int(b.byteSlice.Range(MagicChunksSize, MagicChunksSize+ChunksFormatVersionSize)[0]); v != chunksFormatV1 {
|
|
return errors.Errorf("%s: invalid chunk format version %d", files[i], v)
|
|
}
|
|
|
|
cdm.size.Add(int64(b.byteSlice.Len()))
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
func listChunkFiles(dir string) (map[int]string, error) {
|
|
files, err := ioutil.ReadDir(dir)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
res := map[int]string{}
|
|
for _, fi := range files {
|
|
seq, err := strconv.ParseUint(fi.Name(), 10, 64)
|
|
if err != nil {
|
|
continue
|
|
}
|
|
res[int(seq)] = filepath.Join(dir, fi.Name())
|
|
}
|
|
return res, nil
|
|
}
|
|
|
|
// WriteChunk writes the chunk to the disk.
|
|
// The returned chunk ref is the reference from where the chunk encoding starts for the chunk.
|
|
func (cdm *ChunkDiskMapper) WriteChunk(seriesRef uint64, mint, maxt int64, chk chunkenc.Chunk) (chkRef uint64, err error) {
|
|
cdm.writePathMtx.Lock()
|
|
defer cdm.writePathMtx.Unlock()
|
|
|
|
if cdm.closed {
|
|
return 0, ErrChunkDiskMapperClosed
|
|
}
|
|
|
|
if cdm.shouldCutNewFile(len(chk.Bytes())) {
|
|
if err := cdm.cut(); err != nil {
|
|
return 0, err
|
|
}
|
|
}
|
|
|
|
// if len(chk.Bytes())+MaxHeadChunkMetaSize >= writeBufferSize, it means that chunk >= the buffer size;
|
|
// so no need to flush here, as we have to flush at the end (to not keep partial chunks in buffer).
|
|
if len(chk.Bytes())+MaxHeadChunkMetaSize < writeBufferSize && cdm.chkWriter.Available() < MaxHeadChunkMetaSize+len(chk.Bytes()) {
|
|
if err := cdm.flushBuffer(); err != nil {
|
|
return 0, err
|
|
}
|
|
}
|
|
|
|
cdm.crc32.Reset()
|
|
bytesWritten := 0
|
|
|
|
// The upper 4 bytes are for the head chunk file index and
|
|
// the lower 4 bytes are for the head chunk file offset where to start reading this chunk.
|
|
chkRef = chunkRef(uint64(cdm.curFileSequence), uint64(cdm.curFileSize()))
|
|
|
|
binary.BigEndian.PutUint64(cdm.byteBuf[bytesWritten:], seriesRef)
|
|
bytesWritten += SeriesRefSize
|
|
binary.BigEndian.PutUint64(cdm.byteBuf[bytesWritten:], uint64(mint))
|
|
bytesWritten += MintMaxtSize
|
|
binary.BigEndian.PutUint64(cdm.byteBuf[bytesWritten:], uint64(maxt))
|
|
bytesWritten += MintMaxtSize
|
|
cdm.byteBuf[bytesWritten] = byte(chk.Encoding())
|
|
bytesWritten += ChunkEncodingSize
|
|
n := binary.PutUvarint(cdm.byteBuf[bytesWritten:], uint64(len(chk.Bytes())))
|
|
bytesWritten += n
|
|
|
|
if err := cdm.writeAndAppendToCRC32(cdm.byteBuf[:bytesWritten]); err != nil {
|
|
return 0, err
|
|
}
|
|
if err := cdm.writeAndAppendToCRC32(chk.Bytes()); err != nil {
|
|
return 0, err
|
|
}
|
|
if err := cdm.writeCRC32(); err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
if maxt > cdm.curFileMaxt {
|
|
cdm.curFileMaxt = maxt
|
|
}
|
|
|
|
cdm.chunkBuffer.put(chkRef, chk)
|
|
|
|
if len(chk.Bytes())+MaxHeadChunkMetaSize >= writeBufferSize {
|
|
// The chunk was bigger than the buffer itself.
|
|
// Flushing to not keep partial chunks in buffer.
|
|
if err := cdm.flushBuffer(); err != nil {
|
|
return 0, err
|
|
}
|
|
}
|
|
|
|
return chkRef, nil
|
|
}
|
|
|
|
func chunkRef(seq, offset uint64) (chunkRef uint64) {
|
|
return (seq << 32) | offset
|
|
}
|
|
|
|
// shouldCutNewFile decides the cutting of a new file based on time and size retention.
|
|
// Size retention: because depending on the system architecture, there is a limit on how big of a file we can m-map.
|
|
// Time retention: so that we can delete old chunks with some time guarantee in low load environments.
|
|
func (cdm *ChunkDiskMapper) shouldCutNewFile(chunkSize int) bool {
|
|
return cdm.curFileSize() == 0 || // First head chunk file.
|
|
cdm.curFileSize()+int64(chunkSize+MaxHeadChunkMetaSize) > MaxHeadChunkFileSize // Exceeds the max head chunk file size.
|
|
}
|
|
|
|
// CutNewFile creates a new m-mapped file.
|
|
func (cdm *ChunkDiskMapper) CutNewFile() (returnErr error) {
|
|
cdm.writePathMtx.Lock()
|
|
defer cdm.writePathMtx.Unlock()
|
|
|
|
return cdm.cut()
|
|
}
|
|
|
|
// cut creates a new m-mapped file. The write lock should be held before calling this.
|
|
func (cdm *ChunkDiskMapper) cut() (returnErr error) {
|
|
// Sync current tail to disk and close.
|
|
if err := cdm.finalizeCurFile(); err != nil {
|
|
return err
|
|
}
|
|
|
|
n, newFile, seq, err := cutSegmentFile(cdm.dir, MagicHeadChunks, headChunksFormatV1, HeadChunkFilePreallocationSize)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
defer func() {
|
|
// The file should not be closed if there is no error,
|
|
// its kept open in the ChunkDiskMapper.
|
|
if returnErr != nil {
|
|
var merr tsdb_errors.MultiError
|
|
merr.Add(returnErr)
|
|
merr.Add(newFile.Close())
|
|
returnErr = merr.Err()
|
|
}
|
|
}()
|
|
|
|
cdm.size.Add(cdm.curFileSize())
|
|
cdm.curFileNumBytes.Store(int64(n))
|
|
|
|
if cdm.curFile != nil {
|
|
cdm.readPathMtx.Lock()
|
|
cdm.mmappedChunkFiles[cdm.curFileSequence].maxt = cdm.curFileMaxt
|
|
cdm.readPathMtx.Unlock()
|
|
}
|
|
|
|
mmapFile, err := fileutil.OpenMmapFileWithSize(newFile.Name(), int(MaxHeadChunkFileSize))
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
cdm.readPathMtx.Lock()
|
|
cdm.curFileSequence = seq
|
|
cdm.curFile = newFile
|
|
if cdm.chkWriter != nil {
|
|
cdm.chkWriter.Reset(newFile)
|
|
} else {
|
|
cdm.chkWriter = bufio.NewWriterSize(newFile, writeBufferSize)
|
|
}
|
|
|
|
cdm.closers[cdm.curFileSequence] = mmapFile
|
|
cdm.mmappedChunkFiles[cdm.curFileSequence] = &mmappedChunkFile{byteSlice: realByteSlice(mmapFile.Bytes())}
|
|
cdm.readPathMtx.Unlock()
|
|
|
|
cdm.curFileMaxt = 0
|
|
|
|
return nil
|
|
}
|
|
|
|
// finalizeCurFile writes all pending data to the current tail file,
|
|
// truncates its size, and closes it.
|
|
func (cdm *ChunkDiskMapper) finalizeCurFile() error {
|
|
if cdm.curFile == nil {
|
|
return nil
|
|
}
|
|
|
|
if err := cdm.flushBuffer(); err != nil {
|
|
return err
|
|
}
|
|
|
|
if err := cdm.curFile.Sync(); err != nil {
|
|
return err
|
|
}
|
|
|
|
return cdm.curFile.Close()
|
|
}
|
|
|
|
func (cdm *ChunkDiskMapper) write(b []byte) error {
|
|
n, err := cdm.chkWriter.Write(b)
|
|
cdm.curFileNumBytes.Add(int64(n))
|
|
return err
|
|
}
|
|
|
|
func (cdm *ChunkDiskMapper) writeAndAppendToCRC32(b []byte) error {
|
|
if err := cdm.write(b); err != nil {
|
|
return err
|
|
}
|
|
_, err := cdm.crc32.Write(b)
|
|
return err
|
|
}
|
|
|
|
func (cdm *ChunkDiskMapper) writeCRC32() error {
|
|
return cdm.write(cdm.crc32.Sum(cdm.byteBuf[:0]))
|
|
}
|
|
|
|
// flushBuffer flushes the current in-memory chunks.
|
|
// Assumes that writePathMtx is _write_ locked before calling this method.
|
|
func (cdm *ChunkDiskMapper) flushBuffer() error {
|
|
if err := cdm.chkWriter.Flush(); err != nil {
|
|
return err
|
|
}
|
|
cdm.chunkBuffer.clear()
|
|
return nil
|
|
}
|
|
|
|
// Chunk returns a chunk from a given reference.
|
|
func (cdm *ChunkDiskMapper) Chunk(ref uint64) (chunkenc.Chunk, error) {
|
|
cdm.readPathMtx.RLock()
|
|
// We hold this read lock for the entire duration because if the Close()
|
|
// is called, the data in the byte slice will get corrupted as the mmapped
|
|
// file will be closed.
|
|
defer cdm.readPathMtx.RUnlock()
|
|
|
|
var (
|
|
// Get the upper 4 bytes.
|
|
// These contain the head chunk file index.
|
|
sgmIndex = int(ref >> 32)
|
|
// Get the lower 4 bytes.
|
|
// These contain the head chunk file offset where the chunk starts.
|
|
// We skip the series ref and the mint/maxt beforehand.
|
|
chkStart = int((ref<<32)>>32) + SeriesRefSize + (2 * MintMaxtSize)
|
|
chkCRC32 = newCRC32()
|
|
)
|
|
|
|
if cdm.closed {
|
|
return nil, ErrChunkDiskMapperClosed
|
|
}
|
|
|
|
// If it is the current open file, then the chunks can be in the buffer too.
|
|
if sgmIndex == cdm.curFileSequence {
|
|
chunk := cdm.chunkBuffer.get(ref)
|
|
if chunk != nil {
|
|
return chunk, nil
|
|
}
|
|
}
|
|
|
|
mmapFile, ok := cdm.mmappedChunkFiles[sgmIndex]
|
|
if !ok {
|
|
if sgmIndex > cdm.curFileSequence {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: -1,
|
|
Err: errors.Errorf("head chunk file index %d more than current open file", sgmIndex),
|
|
}
|
|
}
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: errors.New("head chunk file index %d does not exist on disk"),
|
|
}
|
|
}
|
|
|
|
if chkStart+MaxChunkLengthFieldSize > mmapFile.byteSlice.Len() {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: errors.Errorf("head chunk file doesn't include enough bytes to read the chunk size data field - required:%v, available:%v", chkStart+MaxChunkLengthFieldSize, mmapFile.byteSlice.Len()),
|
|
}
|
|
}
|
|
|
|
// Encoding.
|
|
chkEnc := mmapFile.byteSlice.Range(chkStart, chkStart+ChunkEncodingSize)[0]
|
|
|
|
// Data length.
|
|
// With the minimum chunk length this should never cause us reading
|
|
// over the end of the slice.
|
|
chkDataLenStart := chkStart + ChunkEncodingSize
|
|
c := mmapFile.byteSlice.Range(chkDataLenStart, chkDataLenStart+MaxChunkLengthFieldSize)
|
|
chkDataLen, n := binary.Uvarint(c)
|
|
if n <= 0 {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: errors.Errorf("reading chunk length failed with %d", n),
|
|
}
|
|
}
|
|
|
|
// Verify the chunk data end.
|
|
chkDataEnd := chkDataLenStart + n + int(chkDataLen)
|
|
if chkDataEnd > mmapFile.byteSlice.Len() {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: errors.Errorf("head chunk file doesn't include enough bytes to read the chunk - required:%v, available:%v", chkDataEnd, mmapFile.byteSlice.Len()),
|
|
}
|
|
}
|
|
|
|
// Check the CRC.
|
|
sum := mmapFile.byteSlice.Range(chkDataEnd, chkDataEnd+CRCSize)
|
|
if _, err := chkCRC32.Write(mmapFile.byteSlice.Range(chkStart-(SeriesRefSize+2*MintMaxtSize), chkDataEnd)); err != nil {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: err,
|
|
}
|
|
}
|
|
if act := chkCRC32.Sum(nil); !bytes.Equal(act, sum) {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: errors.Errorf("checksum mismatch expected:%x, actual:%x", sum, act),
|
|
}
|
|
}
|
|
|
|
// The chunk data itself.
|
|
chkData := mmapFile.byteSlice.Range(chkDataEnd-int(chkDataLen), chkDataEnd)
|
|
chk, err := cdm.pool.Get(chunkenc.Encoding(chkEnc), chkData)
|
|
if err != nil {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: err,
|
|
}
|
|
}
|
|
return chk, nil
|
|
}
|
|
|
|
// IterateAllChunks iterates on all the chunks in its byte slices in the order of the head chunk file sequence
|
|
// and runs the provided function on each chunk. It returns on the first error encountered.
|
|
// NOTE: This method needs to be called at least once after creating ChunkDiskMapper
|
|
// to set the maxt of all the file.
|
|
func (cdm *ChunkDiskMapper) IterateAllChunks(f func(seriesRef, chunkRef uint64, mint, maxt int64, numSamples uint16) error) (err error) {
|
|
cdm.writePathMtx.Lock()
|
|
defer cdm.writePathMtx.Unlock()
|
|
|
|
defer func() {
|
|
cdm.fileMaxtSet = true
|
|
}()
|
|
|
|
chkCRC32 := newCRC32()
|
|
|
|
// Iterate files in ascending order.
|
|
segIDs := make([]int, 0, len(cdm.mmappedChunkFiles))
|
|
for seg := range cdm.mmappedChunkFiles {
|
|
segIDs = append(segIDs, seg)
|
|
}
|
|
sort.Ints(segIDs)
|
|
for _, segID := range segIDs {
|
|
mmapFile := cdm.mmappedChunkFiles[segID]
|
|
fileEnd := mmapFile.byteSlice.Len()
|
|
if segID == cdm.curFileSequence {
|
|
fileEnd = int(cdm.curFileSize())
|
|
}
|
|
idx := HeadChunkFileHeaderSize
|
|
for idx < fileEnd {
|
|
if fileEnd-idx < MaxHeadChunkMetaSize {
|
|
// Check for all 0s which marks the end of the file.
|
|
allZeros := true
|
|
for _, b := range mmapFile.byteSlice.Range(idx, fileEnd) {
|
|
if b != byte(0) {
|
|
allZeros = false
|
|
break
|
|
}
|
|
}
|
|
if allZeros {
|
|
break
|
|
}
|
|
return &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: segID,
|
|
Err: errors.Errorf("head chunk file doesn't include enough bytes to read the chunk header - required:%v, available:%v, file:%d", idx+MaxHeadChunkMetaSize, fileEnd, segID),
|
|
}
|
|
}
|
|
chkCRC32.Reset()
|
|
chunkRef := chunkRef(uint64(segID), uint64(idx))
|
|
|
|
startIdx := idx
|
|
seriesRef := binary.BigEndian.Uint64(mmapFile.byteSlice.Range(idx, idx+SeriesRefSize))
|
|
idx += SeriesRefSize
|
|
mint := int64(binary.BigEndian.Uint64(mmapFile.byteSlice.Range(idx, idx+MintMaxtSize)))
|
|
idx += MintMaxtSize
|
|
maxt := int64(binary.BigEndian.Uint64(mmapFile.byteSlice.Range(idx, idx+MintMaxtSize)))
|
|
idx += MintMaxtSize
|
|
|
|
// We preallocate file to help with m-mapping (especially windows systems).
|
|
// As series ref always starts from 1, we assume it being 0 to be the end of the actual file data.
|
|
// We are not considering possible file corruption that can cause it to be 0.
|
|
// Additionally we are checking mint and maxt just to be sure.
|
|
if seriesRef == 0 && mint == 0 && maxt == 0 {
|
|
break
|
|
}
|
|
|
|
idx += ChunkEncodingSize // Skip encoding.
|
|
dataLen, n := binary.Uvarint(mmapFile.byteSlice.Range(idx, idx+MaxChunkLengthFieldSize))
|
|
idx += n
|
|
|
|
numSamples := binary.BigEndian.Uint16(mmapFile.byteSlice.Range(idx, idx+2))
|
|
idx += int(dataLen) // Skip the data.
|
|
|
|
// In the beginning we only checked for the chunk meta size.
|
|
// Now that we have added the chunk data length, we check for sufficient bytes again.
|
|
if idx+CRCSize > fileEnd {
|
|
return &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: segID,
|
|
Err: errors.Errorf("head chunk file doesn't include enough bytes to read the chunk header - required:%v, available:%v, file:%d", idx+CRCSize, fileEnd, segID),
|
|
}
|
|
}
|
|
|
|
// Check CRC.
|
|
sum := mmapFile.byteSlice.Range(idx, idx+CRCSize)
|
|
if _, err := chkCRC32.Write(mmapFile.byteSlice.Range(startIdx, idx)); err != nil {
|
|
return err
|
|
}
|
|
if act := chkCRC32.Sum(nil); !bytes.Equal(act, sum) {
|
|
return &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: segID,
|
|
Err: errors.Errorf("checksum mismatch expected:%x, actual:%x", sum, act),
|
|
}
|
|
}
|
|
idx += CRCSize
|
|
|
|
if maxt > mmapFile.maxt {
|
|
mmapFile.maxt = maxt
|
|
}
|
|
|
|
if err := f(seriesRef, chunkRef, mint, maxt, numSamples); err != nil {
|
|
if cerr, ok := err.(*CorruptionErr); ok {
|
|
cerr.Dir = cdm.dir.Name()
|
|
cerr.FileIndex = segID
|
|
return cerr
|
|
}
|
|
return err
|
|
}
|
|
}
|
|
|
|
if idx > fileEnd {
|
|
// It should be equal to the slice length.
|
|
return &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: segID,
|
|
Err: errors.Errorf("head chunk file doesn't include enough bytes to read the last chunk data - required:%v, available:%v, file:%d", idx, fileEnd, segID),
|
|
}
|
|
}
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
// Truncate deletes the head chunk files which are strictly below the mint.
|
|
// mint should be in milliseconds.
|
|
func (cdm *ChunkDiskMapper) Truncate(mint int64) error {
|
|
if !cdm.fileMaxtSet {
|
|
return errors.New("maxt of the files are not set")
|
|
}
|
|
cdm.readPathMtx.RLock()
|
|
|
|
// Sort the file indices, else if files deletion fails in between,
|
|
// it can lead to unsequential files as the map is not sorted.
|
|
chkFileIndices := make([]int, 0, len(cdm.mmappedChunkFiles))
|
|
for seq := range cdm.mmappedChunkFiles {
|
|
chkFileIndices = append(chkFileIndices, seq)
|
|
}
|
|
sort.Ints(chkFileIndices)
|
|
|
|
var removedFiles []int
|
|
for _, seq := range chkFileIndices {
|
|
if seq == cdm.curFileSequence || cdm.mmappedChunkFiles[seq].maxt >= mint {
|
|
break
|
|
}
|
|
if cdm.mmappedChunkFiles[seq].maxt < mint {
|
|
removedFiles = append(removedFiles, seq)
|
|
}
|
|
}
|
|
cdm.readPathMtx.RUnlock()
|
|
|
|
var merr tsdb_errors.MultiError
|
|
// Cut a new file only if the current file has some chunks.
|
|
if cdm.curFileSize() > HeadChunkFileHeaderSize {
|
|
merr.Add(cdm.CutNewFile())
|
|
}
|
|
merr.Add(cdm.deleteFiles(removedFiles))
|
|
return merr.Err()
|
|
}
|
|
|
|
func (cdm *ChunkDiskMapper) deleteFiles(removedFiles []int) error {
|
|
cdm.readPathMtx.Lock()
|
|
for _, seq := range removedFiles {
|
|
if err := cdm.closers[seq].Close(); err != nil {
|
|
cdm.readPathMtx.Unlock()
|
|
return err
|
|
}
|
|
cdm.size.Sub(int64(cdm.mmappedChunkFiles[seq].byteSlice.Len()))
|
|
delete(cdm.mmappedChunkFiles, seq)
|
|
delete(cdm.closers, seq)
|
|
}
|
|
cdm.readPathMtx.Unlock()
|
|
|
|
// We actually delete the files separately to not block the readPathMtx for long.
|
|
for _, seq := range removedFiles {
|
|
if err := os.Remove(segmentFile(cdm.dir.Name(), seq)); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
// DeleteCorrupted deletes all the head chunk files after the one which had the corruption
|
|
// (including the corrupt file).
|
|
func (cdm *ChunkDiskMapper) DeleteCorrupted(originalErr error) error {
|
|
err := errors.Cause(originalErr) // So that we can pick up errors even if wrapped.
|
|
cerr, ok := err.(*CorruptionErr)
|
|
if !ok {
|
|
return errors.Wrap(originalErr, "cannot handle error")
|
|
}
|
|
|
|
// Delete all the head chunk files following the corrupt head chunk file.
|
|
segs := []int{}
|
|
cdm.readPathMtx.RLock()
|
|
for seg := range cdm.mmappedChunkFiles {
|
|
if seg >= cerr.FileIndex {
|
|
segs = append(segs, seg)
|
|
}
|
|
}
|
|
cdm.readPathMtx.RUnlock()
|
|
|
|
return cdm.deleteFiles(segs)
|
|
}
|
|
|
|
// Size returns the size of the chunk files.
|
|
func (cdm *ChunkDiskMapper) Size() int64 {
|
|
return cdm.size.Load() + cdm.curFileSize()
|
|
}
|
|
|
|
func (cdm *ChunkDiskMapper) curFileSize() int64 {
|
|
return cdm.curFileNumBytes.Load()
|
|
}
|
|
|
|
// Close closes all the open files in ChunkDiskMapper.
|
|
// It is not longer safe to access chunks from this struct after calling Close.
|
|
func (cdm *ChunkDiskMapper) Close() error {
|
|
// 'WriteChunk' locks writePathMtx first and then readPathMtx for cutting head chunk file.
|
|
// The lock order should not be reversed here else it can cause deadlocks.
|
|
cdm.writePathMtx.Lock()
|
|
defer cdm.writePathMtx.Unlock()
|
|
cdm.readPathMtx.Lock()
|
|
defer cdm.readPathMtx.Unlock()
|
|
|
|
if cdm.closed {
|
|
return nil
|
|
}
|
|
cdm.closed = true
|
|
|
|
var merr tsdb_errors.MultiError
|
|
merr.Add(closeAllFromMap(cdm.closers))
|
|
merr.Add(cdm.finalizeCurFile())
|
|
merr.Add(cdm.dir.Close())
|
|
|
|
cdm.mmappedChunkFiles = map[int]*mmappedChunkFile{}
|
|
cdm.closers = map[int]io.Closer{}
|
|
|
|
return merr.Err()
|
|
}
|
|
|
|
func closeAllFromMap(cs map[int]io.Closer) error {
|
|
var merr tsdb_errors.MultiError
|
|
for _, c := range cs {
|
|
merr.Add(c.Close())
|
|
}
|
|
return merr.Err()
|
|
}
|
|
|
|
const inBufferShards = 128 // 128 is a randomly chosen number.
|
|
|
|
// chunkBuffer is a thread safe buffer for chunks.
|
|
type chunkBuffer struct {
|
|
inBufferChunks [inBufferShards]map[uint64]chunkenc.Chunk
|
|
inBufferChunksMtxs [inBufferShards]sync.RWMutex
|
|
}
|
|
|
|
func newChunkBuffer() *chunkBuffer {
|
|
cb := &chunkBuffer{}
|
|
for i := 0; i < inBufferShards; i++ {
|
|
cb.inBufferChunks[i] = make(map[uint64]chunkenc.Chunk)
|
|
}
|
|
return cb
|
|
}
|
|
|
|
func (cb *chunkBuffer) put(ref uint64, chk chunkenc.Chunk) {
|
|
shardIdx := ref % inBufferShards
|
|
|
|
cb.inBufferChunksMtxs[shardIdx].Lock()
|
|
cb.inBufferChunks[shardIdx][ref] = chk
|
|
cb.inBufferChunksMtxs[shardIdx].Unlock()
|
|
}
|
|
|
|
func (cb *chunkBuffer) get(ref uint64) chunkenc.Chunk {
|
|
shardIdx := ref % inBufferShards
|
|
|
|
cb.inBufferChunksMtxs[shardIdx].RLock()
|
|
defer cb.inBufferChunksMtxs[shardIdx].RUnlock()
|
|
|
|
return cb.inBufferChunks[shardIdx][ref]
|
|
}
|
|
|
|
func (cb *chunkBuffer) clear() {
|
|
for i := 0; i < inBufferShards; i++ {
|
|
cb.inBufferChunksMtxs[i].Lock()
|
|
cb.inBufferChunks[i] = make(map[uint64]chunkenc.Chunk)
|
|
cb.inBufferChunksMtxs[i].Unlock()
|
|
}
|
|
}
|