prometheus/tsdb/head_append.go
Oleg Zaytsev af0f6da5cb
Fix chunk overflow appending samples at a variable rate (#10607)
* Add a test with variable samples rate append

This test overflows the chunk created in memseries, and the total amount
of samples in the (only) mmapped chunk is 29, instead of the 65565
appended ones.

Signed-off-by: Oleg Zaytsev <mail@olegzaytsev.com>

* Cut new chunk when rate prediction was wrong

When appending samples at a slow rate, and then appending at a higher
rate, the prediction we made to cut a new chunk is no longer valid.
Sometimes this can even cause an overflow in the chunk, if more samples
than uint16 can hold are appended.

Signed-off-by: Oleg Zaytsev <mail@olegzaytsev.com>

* Improve comment on 2*samplesPerChunk

Signed-off-by: Oleg Zaytsev <mail@olegzaytsev.com>

* Assert that all chunks have less than 240 samples

Also, trigger new chunk at 240, not at more than 240

Signed-off-by: Oleg Zaytsev <mail@olegzaytsev.com>
2022-04-20 14:54:20 +02:00

629 lines
18 KiB
Go

// Copyright 2021 The Prometheus Authors
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
package tsdb
import (
"context"
"fmt"
"math"
"github.com/go-kit/log/level"
"github.com/pkg/errors"
"github.com/prometheus/prometheus/model/exemplar"
"github.com/prometheus/prometheus/model/labels"
"github.com/prometheus/prometheus/storage"
"github.com/prometheus/prometheus/tsdb/chunkenc"
"github.com/prometheus/prometheus/tsdb/chunks"
"github.com/prometheus/prometheus/tsdb/record"
)
// initAppender is a helper to initialize the time bounds of the head
// upon the first sample it receives.
type initAppender struct {
app storage.Appender
head *Head
}
var _ storage.GetRef = &initAppender{}
func (a *initAppender) Append(ref storage.SeriesRef, lset labels.Labels, t int64, v float64) (storage.SeriesRef, error) {
if a.app != nil {
return a.app.Append(ref, lset, t, v)
}
a.head.initTime(t)
a.app = a.head.appender()
return a.app.Append(ref, lset, t, v)
}
func (a *initAppender) AppendExemplar(ref storage.SeriesRef, l labels.Labels, e exemplar.Exemplar) (storage.SeriesRef, error) {
// Check if exemplar storage is enabled.
if !a.head.opts.EnableExemplarStorage || a.head.opts.MaxExemplars.Load() <= 0 {
return 0, nil
}
if a.app != nil {
return a.app.AppendExemplar(ref, l, e)
}
// We should never reach here given we would call Append before AppendExemplar
// and we probably want to always base head/WAL min time on sample times.
a.head.initTime(e.Ts)
a.app = a.head.appender()
return a.app.AppendExemplar(ref, l, e)
}
// initTime initializes a head with the first timestamp. This only needs to be called
// for a completely fresh head with an empty WAL.
func (h *Head) initTime(t int64) {
if !h.minTime.CAS(math.MaxInt64, t) {
return
}
// Ensure that max time is initialized to at least the min time we just set.
// Concurrent appenders may already have set it to a higher value.
h.maxTime.CAS(math.MinInt64, t)
}
func (a *initAppender) GetRef(lset labels.Labels) (storage.SeriesRef, labels.Labels) {
if g, ok := a.app.(storage.GetRef); ok {
return g.GetRef(lset)
}
return 0, nil
}
func (a *initAppender) Commit() error {
if a.app == nil {
a.head.metrics.activeAppenders.Dec()
return nil
}
return a.app.Commit()
}
func (a *initAppender) Rollback() error {
if a.app == nil {
a.head.metrics.activeAppenders.Dec()
return nil
}
return a.app.Rollback()
}
// Appender returns a new Appender on the database.
func (h *Head) Appender(_ context.Context) storage.Appender {
h.metrics.activeAppenders.Inc()
// The head cache might not have a starting point yet. The init appender
// picks up the first appended timestamp as the base.
if h.MinTime() == math.MaxInt64 {
return &initAppender{
head: h,
}
}
return h.appender()
}
func (h *Head) appender() *headAppender {
appendID, cleanupAppendIDsBelow := h.iso.newAppendID() // Every appender gets an ID that is cleared upon commit/rollback.
// Allocate the exemplars buffer only if exemplars are enabled.
var exemplarsBuf []exemplarWithSeriesRef
if h.opts.EnableExemplarStorage {
exemplarsBuf = h.getExemplarBuffer()
}
return &headAppender{
head: h,
minValidTime: h.appendableMinValidTime(),
mint: math.MaxInt64,
maxt: math.MinInt64,
samples: h.getAppendBuffer(),
sampleSeries: h.getSeriesBuffer(),
exemplars: exemplarsBuf,
appendID: appendID,
cleanupAppendIDsBelow: cleanupAppendIDsBelow,
}
}
// appendableMinValidTime returns the minimum valid timestamp for appends,
// such that samples stay ahead of prior blocks and the head compaction window.
func (h *Head) appendableMinValidTime() int64 {
// This boundary ensures that no samples will be added to the compaction window.
// This allows race-free, concurrent appending and compaction.
cwEnd := h.MaxTime() - h.chunkRange.Load()/2
// This boundary ensures that we avoid overlapping timeframes from one block to the next.
// While not necessary for correctness, it means we're not required to use vertical compaction.
minValid := h.minValidTime.Load()
return max(cwEnd, minValid)
}
// AppendableMinValidTime returns the minimum valid time for samples to be appended to the Head.
// Returns false if Head hasn't been initialized yet and the minimum time isn't known yet.
func (h *Head) AppendableMinValidTime() (int64, bool) {
if h.MinTime() == math.MaxInt64 {
return 0, false
}
return h.appendableMinValidTime(), true
}
func max(a, b int64) int64 {
if a > b {
return a
}
return b
}
func (h *Head) getAppendBuffer() []record.RefSample {
b := h.appendPool.Get()
if b == nil {
return make([]record.RefSample, 0, 512)
}
return b.([]record.RefSample)
}
func (h *Head) putAppendBuffer(b []record.RefSample) {
//nolint:staticcheck // Ignore SA6002 safe to ignore and actually fixing it has some performance penalty.
h.appendPool.Put(b[:0])
}
func (h *Head) getExemplarBuffer() []exemplarWithSeriesRef {
b := h.exemplarsPool.Get()
if b == nil {
return make([]exemplarWithSeriesRef, 0, 512)
}
return b.([]exemplarWithSeriesRef)
}
func (h *Head) putExemplarBuffer(b []exemplarWithSeriesRef) {
if b == nil {
return
}
//nolint:staticcheck // Ignore SA6002 safe to ignore and actually fixing it has some performance penalty.
h.exemplarsPool.Put(b[:0])
}
func (h *Head) getSeriesBuffer() []*memSeries {
b := h.seriesPool.Get()
if b == nil {
return make([]*memSeries, 0, 512)
}
return b.([]*memSeries)
}
func (h *Head) putSeriesBuffer(b []*memSeries) {
//nolint:staticcheck // Ignore SA6002 safe to ignore and actually fixing it has some performance penalty.
h.seriesPool.Put(b[:0])
}
func (h *Head) getBytesBuffer() []byte {
b := h.bytesPool.Get()
if b == nil {
return make([]byte, 0, 1024)
}
return b.([]byte)
}
func (h *Head) putBytesBuffer(b []byte) {
//nolint:staticcheck // Ignore SA6002 safe to ignore and actually fixing it has some performance penalty.
h.bytesPool.Put(b[:0])
}
type exemplarWithSeriesRef struct {
ref storage.SeriesRef
exemplar exemplar.Exemplar
}
type headAppender struct {
head *Head
minValidTime int64 // No samples below this timestamp are allowed.
mint, maxt int64
series []record.RefSeries // New series held by this appender.
samples []record.RefSample // New samples held by this appender.
exemplars []exemplarWithSeriesRef // New exemplars held by this appender.
sampleSeries []*memSeries // Series corresponding to the samples held by this appender (using corresponding slice indices - same series may appear more than once).
appendID, cleanupAppendIDsBelow uint64
closed bool
}
func (a *headAppender) Append(ref storage.SeriesRef, lset labels.Labels, t int64, v float64) (storage.SeriesRef, error) {
if t < a.minValidTime {
a.head.metrics.outOfBoundSamples.Inc()
return 0, storage.ErrOutOfBounds
}
s := a.head.series.getByID(chunks.HeadSeriesRef(ref))
if s == nil {
// Ensure no empty labels have gotten through.
lset = lset.WithoutEmpty()
if len(lset) == 0 {
return 0, errors.Wrap(ErrInvalidSample, "empty labelset")
}
if l, dup := lset.HasDuplicateLabelNames(); dup {
return 0, errors.Wrap(ErrInvalidSample, fmt.Sprintf(`label name "%s" is not unique`, l))
}
var created bool
var err error
s, created, err = a.head.getOrCreate(lset.Hash(), lset)
if err != nil {
return 0, err
}
if created {
a.series = append(a.series, record.RefSeries{
Ref: s.ref,
Labels: lset,
})
}
}
s.Lock()
if err := s.appendable(t, v); err != nil {
s.Unlock()
if err == storage.ErrOutOfOrderSample {
a.head.metrics.outOfOrderSamples.Inc()
}
return 0, err
}
s.pendingCommit = true
s.Unlock()
if t < a.mint {
a.mint = t
}
if t > a.maxt {
a.maxt = t
}
a.samples = append(a.samples, record.RefSample{
Ref: s.ref,
T: t,
V: v,
})
a.sampleSeries = append(a.sampleSeries, s)
return storage.SeriesRef(s.ref), nil
}
// appendable checks whether the given sample is valid for appending to the series.
func (s *memSeries) appendable(t int64, v float64) error {
c := s.head()
if c == nil {
return nil
}
if t > c.maxTime {
return nil
}
if t < c.maxTime {
return storage.ErrOutOfOrderSample
}
// We are allowing exact duplicates as we can encounter them in valid cases
// like federation and erroring out at that time would be extremely noisy.
if math.Float64bits(s.sampleBuf[3].v) != math.Float64bits(v) {
return storage.ErrDuplicateSampleForTimestamp
}
return nil
}
// AppendExemplar for headAppender assumes the series ref already exists, and so it doesn't
// use getOrCreate or make any of the lset sanity checks that Append does.
func (a *headAppender) AppendExemplar(ref storage.SeriesRef, lset labels.Labels, e exemplar.Exemplar) (storage.SeriesRef, error) {
// Check if exemplar storage is enabled.
if !a.head.opts.EnableExemplarStorage || a.head.opts.MaxExemplars.Load() <= 0 {
return 0, nil
}
// Get Series
s := a.head.series.getByID(chunks.HeadSeriesRef(ref))
if s == nil {
s = a.head.series.getByHash(lset.Hash(), lset)
if s != nil {
ref = storage.SeriesRef(s.ref)
}
}
if s == nil {
return 0, fmt.Errorf("unknown HeadSeriesRef when trying to add exemplar: %d", ref)
}
// Ensure no empty labels have gotten through.
e.Labels = e.Labels.WithoutEmpty()
err := a.head.exemplars.ValidateExemplar(s.lset, e)
if err != nil {
if err == storage.ErrDuplicateExemplar || err == storage.ErrExemplarsDisabled {
// Duplicate, don't return an error but don't accept the exemplar.
return 0, nil
}
return 0, err
}
a.exemplars = append(a.exemplars, exemplarWithSeriesRef{ref, e})
return storage.SeriesRef(s.ref), nil
}
var _ storage.GetRef = &headAppender{}
func (a *headAppender) GetRef(lset labels.Labels) (storage.SeriesRef, labels.Labels) {
s := a.head.series.getByHash(lset.Hash(), lset)
if s == nil {
return 0, nil
}
// returned labels must be suitable to pass to Append()
return storage.SeriesRef(s.ref), s.lset
}
// log writes all headAppender's data to the WAL.
func (a *headAppender) log() error {
if a.head.wal == nil {
return nil
}
buf := a.head.getBytesBuffer()
defer func() { a.head.putBytesBuffer(buf) }()
var rec []byte
var enc record.Encoder
if len(a.series) > 0 {
rec = enc.Series(a.series, buf)
buf = rec[:0]
if err := a.head.wal.Log(rec); err != nil {
return errors.Wrap(err, "log series")
}
}
if len(a.samples) > 0 {
rec = enc.Samples(a.samples, buf)
buf = rec[:0]
if err := a.head.wal.Log(rec); err != nil {
return errors.Wrap(err, "log samples")
}
}
if len(a.exemplars) > 0 {
rec = enc.Exemplars(exemplarsForEncoding(a.exemplars), buf)
buf = rec[:0]
if err := a.head.wal.Log(rec); err != nil {
return errors.Wrap(err, "log exemplars")
}
}
return nil
}
func exemplarsForEncoding(es []exemplarWithSeriesRef) []record.RefExemplar {
ret := make([]record.RefExemplar, 0, len(es))
for _, e := range es {
ret = append(ret, record.RefExemplar{
Ref: chunks.HeadSeriesRef(e.ref),
T: e.exemplar.Ts,
V: e.exemplar.Value,
Labels: e.exemplar.Labels,
})
}
return ret
}
// Commit writes to the WAL and adds the data to the Head.
func (a *headAppender) Commit() (err error) {
if a.closed {
return ErrAppenderClosed
}
defer func() { a.closed = true }()
if err := a.log(); err != nil {
_ = a.Rollback() // Most likely the same error will happen again.
return errors.Wrap(err, "write to WAL")
}
// No errors logging to WAL, so pass the exemplars along to the in memory storage.
for _, e := range a.exemplars {
s := a.head.series.getByID(chunks.HeadSeriesRef(e.ref))
// We don't instrument exemplar appends here, all is instrumented by storage.
if err := a.head.exemplars.AddExemplar(s.lset, e.exemplar); err != nil {
if err == storage.ErrOutOfOrderExemplar {
continue
}
level.Debug(a.head.logger).Log("msg", "Unknown error while adding exemplar", "err", err)
}
}
defer a.head.metrics.activeAppenders.Dec()
defer a.head.putAppendBuffer(a.samples)
defer a.head.putSeriesBuffer(a.sampleSeries)
defer a.head.putExemplarBuffer(a.exemplars)
defer a.head.iso.closeAppend(a.appendID)
total := len(a.samples)
var series *memSeries
for i, s := range a.samples {
series = a.sampleSeries[i]
series.Lock()
ok, chunkCreated := series.append(s.T, s.V, a.appendID, a.head.chunkDiskMapper)
series.cleanupAppendIDsBelow(a.cleanupAppendIDsBelow)
series.pendingCommit = false
series.Unlock()
if !ok {
total--
a.head.metrics.outOfOrderSamples.Inc()
}
if chunkCreated {
a.head.metrics.chunks.Inc()
a.head.metrics.chunksCreated.Inc()
}
}
a.head.metrics.samplesAppended.Add(float64(total))
a.head.updateMinMaxTime(a.mint, a.maxt)
return nil
}
// append adds the sample (t, v) to the series. The caller also has to provide
// the appendID for isolation. (The appendID can be zero, which results in no
// isolation for this append.)
// It is unsafe to call this concurrently with s.iterator(...) without holding the series lock.
func (s *memSeries) append(t int64, v float64, appendID uint64, chunkDiskMapper *chunks.ChunkDiskMapper) (sampleInOrder, chunkCreated bool) {
// Based on Gorilla white papers this offers near-optimal compression ratio
// so anything bigger that this has diminishing returns and increases
// the time range within which we have to decompress all samples.
const samplesPerChunk = 120
c := s.head()
if c == nil {
if len(s.mmappedChunks) > 0 && s.mmappedChunks[len(s.mmappedChunks)-1].maxTime >= t {
// Out of order sample. Sample timestamp is already in the mmapped chunks, so ignore it.
return false, false
}
// There is no chunk in this series yet, create the first chunk for the sample.
c = s.cutNewHeadChunk(t, chunkDiskMapper)
chunkCreated = true
}
// Out of order sample.
if c.maxTime >= t {
return false, chunkCreated
}
numSamples := c.chunk.NumSamples()
if numSamples == 0 {
// It could be the new chunk created after reading the chunk snapshot,
// hence we fix the minTime of the chunk here.
c.minTime = t
s.nextAt = rangeForTimestamp(c.minTime, s.chunkRange)
}
// If we reach 25% of a chunk's desired sample count, predict an end time
// for this chunk that will try to make samples equally distributed within
// the remaining chunks in the current chunk range.
// At latest it must happen at the timestamp set when the chunk was cut.
if numSamples == samplesPerChunk/4 {
s.nextAt = computeChunkEndTime(c.minTime, c.maxTime, s.nextAt)
}
// If numSamples > samplesPerChunk*2 then our previous prediction was invalid,
// most likely because samples rate has changed and now they are arriving more frequently.
// Since we assume that the rate is higher, we're being conservative and cutting at 2*samplesPerChunk
// as we expect more chunks to come.
// Note that next chunk will have its nextAt recalculated for the new rate.
if t >= s.nextAt || numSamples >= samplesPerChunk*2 {
c = s.cutNewHeadChunk(t, chunkDiskMapper)
chunkCreated = true
}
s.app.Append(t, v)
c.maxTime = t
s.sampleBuf[0] = s.sampleBuf[1]
s.sampleBuf[1] = s.sampleBuf[2]
s.sampleBuf[2] = s.sampleBuf[3]
s.sampleBuf[3] = sample{t: t, v: v}
if appendID > 0 && s.txs != nil {
s.txs.add(appendID)
}
return true, chunkCreated
}
// computeChunkEndTime estimates the end timestamp based the beginning of a
// chunk, its current timestamp and the upper bound up to which we insert data.
// It assumes that the time range is 1/4 full.
// Assuming that the samples will keep arriving at the same rate, it will make the
// remaining n chunks within this chunk range (before max) equally sized.
func computeChunkEndTime(start, cur, max int64) int64 {
n := (max - start) / ((cur - start + 1) * 4)
if n <= 1 {
return max
}
return start + (max-start)/n
}
func (s *memSeries) cutNewHeadChunk(mint int64, chunkDiskMapper *chunks.ChunkDiskMapper) *memChunk {
s.mmapCurrentHeadChunk(chunkDiskMapper)
s.headChunk = &memChunk{
chunk: chunkenc.NewXORChunk(),
minTime: mint,
maxTime: math.MinInt64,
}
// Set upper bound on when the next chunk must be started. An earlier timestamp
// may be chosen dynamically at a later point.
s.nextAt = rangeForTimestamp(mint, s.chunkRange)
app, err := s.headChunk.chunk.Appender()
if err != nil {
panic(err)
}
s.app = app
return s.headChunk
}
func (s *memSeries) mmapCurrentHeadChunk(chunkDiskMapper *chunks.ChunkDiskMapper) {
if s.headChunk == nil {
// There is no head chunk, so nothing to m-map here.
return
}
chunkRef := chunkDiskMapper.WriteChunk(s.ref, s.headChunk.minTime, s.headChunk.maxTime, s.headChunk.chunk, handleChunkWriteError)
s.mmappedChunks = append(s.mmappedChunks, &mmappedChunk{
ref: chunkRef,
numSamples: uint16(s.headChunk.chunk.NumSamples()),
minTime: s.headChunk.minTime,
maxTime: s.headChunk.maxTime,
})
}
func handleChunkWriteError(err error) {
if err != nil && err != chunks.ErrChunkDiskMapperClosed {
panic(err)
}
}
// Rollback removes the samples and exemplars from headAppender and writes any series to WAL.
func (a *headAppender) Rollback() (err error) {
if a.closed {
return ErrAppenderClosed
}
defer func() { a.closed = true }()
defer a.head.metrics.activeAppenders.Dec()
defer a.head.iso.closeAppend(a.appendID)
defer a.head.putSeriesBuffer(a.sampleSeries)
var series *memSeries
for i := range a.samples {
series = a.sampleSeries[i]
series.Lock()
series.cleanupAppendIDsBelow(a.cleanupAppendIDsBelow)
series.pendingCommit = false
series.Unlock()
}
a.head.putAppendBuffer(a.samples)
a.head.putExemplarBuffer(a.exemplars)
a.samples = nil
a.exemplars = nil
// Series are created in the head memory regardless of rollback. Thus we have
// to log them to the WAL in any case.
return a.log()
}