prometheus/tsdb/chunkenc/xor.go
Filip Petkovski 583f3e587c
Optimize histogram iterators (#13340)
Optimize histogram iterators

Histogram iterators allocate new objects in the AtHistogram and
AtFloatHistogram methods, which makes calculating rates over long
ranges expensive.

In #13215 we allowed an existing object to be reused
when converting an integer histogram to a float histogram. This commit follows
the same idea and allows injecting an existing object in the AtHistogram and
AtFloatHistogram methods. When the injected value is nil, iterators allocate
new histograms, otherwise they populate and return the injected object.

The commit also adds a CopyTo method to Histogram and FloatHistogram which
is used in the BufferedIterator to overwrite items in the ring instead of making
new copies.

Note that a specialized HPoint pool is needed for all of this to work 
(`matrixSelectorHPool`).

---------

Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
Co-authored-by: George Krajcsovits <krajorama@users.noreply.github.com>
2024-01-23 17:02:14 +01:00

508 lines
12 KiB
Go

// Copyright 2017 The Prometheus Authors
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
// The code in this file was largely written by Damian Gryski as part of
// https://github.com/dgryski/go-tsz and published under the license below.
// It was modified to accommodate reading from byte slices without modifying
// the underlying bytes, which would panic when reading from mmap'd
// read-only byte slices.
// Copyright (c) 2015,2016 Damian Gryski <damian@gryski.com>
// All rights reserved.
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
// * Redistributions of source code must retain the above copyright notice,
// this list of conditions and the following disclaimer.
//
// * Redistributions in binary form must reproduce the above copyright notice,
// this list of conditions and the following disclaimer in the documentation
// and/or other materials provided with the distribution.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
// DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
// OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
// OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
package chunkenc
import (
"encoding/binary"
"math"
"math/bits"
"github.com/prometheus/prometheus/model/histogram"
)
const (
chunkCompactCapacityThreshold = 32
)
// XORChunk holds XOR encoded sample data.
type XORChunk struct {
b bstream
}
// NewXORChunk returns a new chunk with XOR encoding of the given size.
func NewXORChunk() *XORChunk {
b := make([]byte, 2, 128)
return &XORChunk{b: bstream{stream: b, count: 0}}
}
// Encoding returns the encoding type.
func (c *XORChunk) Encoding() Encoding {
return EncXOR
}
// Bytes returns the underlying byte slice of the chunk.
func (c *XORChunk) Bytes() []byte {
return c.b.bytes()
}
// NumSamples returns the number of samples in the chunk.
func (c *XORChunk) NumSamples() int {
return int(binary.BigEndian.Uint16(c.Bytes()))
}
// Compact implements the Chunk interface.
func (c *XORChunk) Compact() {
if l := len(c.b.stream); cap(c.b.stream) > l+chunkCompactCapacityThreshold {
buf := make([]byte, l)
copy(buf, c.b.stream)
c.b.stream = buf
}
}
// Appender implements the Chunk interface.
// It is not valid to call Appender() multiple times concurrently or to use multiple
// Appenders on the same chunk.
func (c *XORChunk) Appender() (Appender, error) {
it := c.iterator(nil)
// To get an appender we must know the state it would have if we had
// appended all existing data from scratch.
// We iterate through the end and populate via the iterator's state.
for it.Next() != ValNone {
}
if err := it.Err(); err != nil {
return nil, err
}
a := &xorAppender{
b: &c.b,
t: it.t,
v: it.val,
tDelta: it.tDelta,
leading: it.leading,
trailing: it.trailing,
}
if it.numTotal == 0 {
a.leading = 0xff
}
return a, nil
}
func (c *XORChunk) iterator(it Iterator) *xorIterator {
if xorIter, ok := it.(*xorIterator); ok {
xorIter.Reset(c.b.bytes())
return xorIter
}
return &xorIterator{
// The first 2 bytes contain chunk headers.
// We skip that for actual samples.
br: newBReader(c.b.bytes()[2:]),
numTotal: binary.BigEndian.Uint16(c.b.bytes()),
t: math.MinInt64,
}
}
// Iterator implements the Chunk interface.
// Iterator() must not be called concurrently with any modifications to the chunk,
// but after it returns you can use an Iterator concurrently with an Appender or
// other Iterators.
func (c *XORChunk) Iterator(it Iterator) Iterator {
return c.iterator(it)
}
type xorAppender struct {
b *bstream
t int64
v float64
tDelta uint64
leading uint8
trailing uint8
}
func (a *xorAppender) Append(t int64, v float64) {
var tDelta uint64
num := binary.BigEndian.Uint16(a.b.bytes())
switch num {
case 0:
buf := make([]byte, binary.MaxVarintLen64)
for _, b := range buf[:binary.PutVarint(buf, t)] {
a.b.writeByte(b)
}
a.b.writeBits(math.Float64bits(v), 64)
case 1:
tDelta = uint64(t - a.t)
buf := make([]byte, binary.MaxVarintLen64)
for _, b := range buf[:binary.PutUvarint(buf, tDelta)] {
a.b.writeByte(b)
}
a.writeVDelta(v)
default:
tDelta = uint64(t - a.t)
dod := int64(tDelta - a.tDelta)
// Gorilla has a max resolution of seconds, Prometheus milliseconds.
// Thus we use higher value range steps with larger bit size.
//
// TODO(beorn7): This seems to needlessly jump to large bit
// sizes even for very small deviations from zero. Timestamp
// compression can probably benefit from some smaller bit
// buckets. See also what was done for histogram encoding in
// varbit.go.
switch {
case dod == 0:
a.b.writeBit(zero)
case bitRange(dod, 14):
a.b.writeBits(0b10, 2)
a.b.writeBits(uint64(dod), 14)
case bitRange(dod, 17):
a.b.writeBits(0b110, 3)
a.b.writeBits(uint64(dod), 17)
case bitRange(dod, 20):
a.b.writeBits(0b1110, 4)
a.b.writeBits(uint64(dod), 20)
default:
a.b.writeBits(0b1111, 4)
a.b.writeBits(uint64(dod), 64)
}
a.writeVDelta(v)
}
a.t = t
a.v = v
binary.BigEndian.PutUint16(a.b.bytes(), num+1)
a.tDelta = tDelta
}
// bitRange returns whether the given integer can be represented by nbits.
// See docs/bstream.md.
func bitRange(x int64, nbits uint8) bool {
return -((1<<(nbits-1))-1) <= x && x <= 1<<(nbits-1)
}
func (a *xorAppender) writeVDelta(v float64) {
xorWrite(a.b, v, a.v, &a.leading, &a.trailing)
}
func (a *xorAppender) AppendHistogram(*HistogramAppender, int64, *histogram.Histogram, bool) (Chunk, bool, Appender, error) {
panic("appended a histogram sample to a float chunk")
}
func (a *xorAppender) AppendFloatHistogram(*FloatHistogramAppender, int64, *histogram.FloatHistogram, bool) (Chunk, bool, Appender, error) {
panic("appended a float histogram sample to a float chunk")
}
type xorIterator struct {
br bstreamReader
numTotal uint16
numRead uint16
t int64
val float64
leading uint8
trailing uint8
tDelta uint64
err error
}
func (it *xorIterator) Seek(t int64) ValueType {
if it.err != nil {
return ValNone
}
for t > it.t || it.numRead == 0 {
if it.Next() == ValNone {
return ValNone
}
}
return ValFloat
}
func (it *xorIterator) At() (int64, float64) {
return it.t, it.val
}
func (it *xorIterator) AtHistogram(*histogram.Histogram) (int64, *histogram.Histogram) {
panic("cannot call xorIterator.AtHistogram")
}
func (it *xorIterator) AtFloatHistogram(*histogram.FloatHistogram) (int64, *histogram.FloatHistogram) {
panic("cannot call xorIterator.AtFloatHistogram")
}
func (it *xorIterator) AtT() int64 {
return it.t
}
func (it *xorIterator) Err() error {
return it.err
}
func (it *xorIterator) Reset(b []byte) {
// The first 2 bytes contain chunk headers.
// We skip that for actual samples.
it.br = newBReader(b[2:])
it.numTotal = binary.BigEndian.Uint16(b)
it.numRead = 0
it.t = 0
it.val = 0
it.leading = 0
it.trailing = 0
it.tDelta = 0
it.err = nil
}
func (it *xorIterator) Next() ValueType {
if it.err != nil || it.numRead == it.numTotal {
return ValNone
}
if it.numRead == 0 {
t, err := binary.ReadVarint(&it.br)
if err != nil {
it.err = err
return ValNone
}
v, err := it.br.readBits(64)
if err != nil {
it.err = err
return ValNone
}
it.t = t
it.val = math.Float64frombits(v)
it.numRead++
return ValFloat
}
if it.numRead == 1 {
tDelta, err := binary.ReadUvarint(&it.br)
if err != nil {
it.err = err
return ValNone
}
it.tDelta = tDelta
it.t += int64(it.tDelta)
return it.readValue()
}
var d byte
// read delta-of-delta
for i := 0; i < 4; i++ {
d <<= 1
bit, err := it.br.readBitFast()
if err != nil {
bit, err = it.br.readBit()
}
if err != nil {
it.err = err
return ValNone
}
if bit == zero {
break
}
d |= 1
}
var sz uint8
var dod int64
switch d {
case 0b0:
// dod == 0
case 0b10:
sz = 14
case 0b110:
sz = 17
case 0b1110:
sz = 20
case 0b1111:
// Do not use fast because it's very unlikely it will succeed.
bits, err := it.br.readBits(64)
if err != nil {
it.err = err
return ValNone
}
dod = int64(bits)
}
if sz != 0 {
bits, err := it.br.readBitsFast(sz)
if err != nil {
bits, err = it.br.readBits(sz)
}
if err != nil {
it.err = err
return ValNone
}
// Account for negative numbers, which come back as high unsigned numbers.
// See docs/bstream.md.
if bits > (1 << (sz - 1)) {
bits -= 1 << sz
}
dod = int64(bits)
}
it.tDelta = uint64(int64(it.tDelta) + dod)
it.t += int64(it.tDelta)
return it.readValue()
}
func (it *xorIterator) readValue() ValueType {
err := xorRead(&it.br, &it.val, &it.leading, &it.trailing)
if err != nil {
it.err = err
return ValNone
}
it.numRead++
return ValFloat
}
func xorWrite(b *bstream, newValue, currentValue float64, leading, trailing *uint8) {
delta := math.Float64bits(newValue) ^ math.Float64bits(currentValue)
if delta == 0 {
b.writeBit(zero)
return
}
b.writeBit(one)
newLeading := uint8(bits.LeadingZeros64(delta))
newTrailing := uint8(bits.TrailingZeros64(delta))
// Clamp number of leading zeros to avoid overflow when encoding.
if newLeading >= 32 {
newLeading = 31
}
if *leading != 0xff && newLeading >= *leading && newTrailing >= *trailing {
// In this case, we stick with the current leading/trailing.
b.writeBit(zero)
b.writeBits(delta>>*trailing, 64-int(*leading)-int(*trailing))
return
}
// Update leading/trailing for the caller.
*leading, *trailing = newLeading, newTrailing
b.writeBit(one)
b.writeBits(uint64(newLeading), 5)
// Note that if newLeading == newTrailing == 0, then sigbits == 64. But
// that value doesn't actually fit into the 6 bits we have. Luckily, we
// never need to encode 0 significant bits, since that would put us in
// the other case (vdelta == 0). So instead we write out a 0 and adjust
// it back to 64 on unpacking.
sigbits := 64 - newLeading - newTrailing
b.writeBits(uint64(sigbits), 6)
b.writeBits(delta>>newTrailing, int(sigbits))
}
func xorRead(br *bstreamReader, value *float64, leading, trailing *uint8) error {
bit, err := br.readBitFast()
if err != nil {
bit, err = br.readBit()
}
if err != nil {
return err
}
if bit == zero {
return nil
}
bit, err = br.readBitFast()
if err != nil {
bit, err = br.readBit()
}
if err != nil {
return err
}
var (
bits uint64
newLeading, newTrailing, mbits uint8
)
if bit == zero {
// Reuse leading/trailing zero bits.
newLeading, newTrailing = *leading, *trailing
mbits = 64 - newLeading - newTrailing
} else {
bits, err = br.readBitsFast(5)
if err != nil {
bits, err = br.readBits(5)
}
if err != nil {
return err
}
newLeading = uint8(bits)
bits, err = br.readBitsFast(6)
if err != nil {
bits, err = br.readBits(6)
}
if err != nil {
return err
}
mbits = uint8(bits)
// 0 significant bits here means we overflowed and we actually
// need 64; see comment in xrWrite.
if mbits == 0 {
mbits = 64
}
newTrailing = 64 - newLeading - mbits
// Update leading/trailing zero bits for the caller.
*leading, *trailing = newLeading, newTrailing
}
bits, err = br.readBitsFast(mbits)
if err != nil {
bits, err = br.readBits(mbits)
}
if err != nil {
return err
}
vbits := math.Float64bits(*value)
vbits ^= bits << newTrailing
*value = math.Float64frombits(vbits)
return nil
}