prometheus/tsdb/compact.go

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2017-04-10 11:59:45 -07:00
// Copyright 2017 The Prometheus Authors
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
package tsdb
import (
"context"
"crypto/rand"
"errors"
"fmt"
"io"
"log/slog"
"os"
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"path/filepath"
"slices"
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"time"
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"github.com/oklog/ulid"
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"github.com/prometheus/client_golang/prometheus"
"github.com/prometheus/common/promslog"
"github.com/prometheus/prometheus/storage"
"github.com/prometheus/prometheus/tsdb/chunkenc"
"github.com/prometheus/prometheus/tsdb/chunks"
tsdb_errors "github.com/prometheus/prometheus/tsdb/errors"
"github.com/prometheus/prometheus/tsdb/fileutil"
"github.com/prometheus/prometheus/tsdb/index"
"github.com/prometheus/prometheus/tsdb/tombstones"
)
// ExponentialBlockRanges returns the time ranges based on the stepSize.
func ExponentialBlockRanges(minSize int64, steps, stepSize int) []int64 {
ranges := make([]int64, 0, steps)
curRange := minSize
for i := 0; i < steps; i++ {
ranges = append(ranges, curRange)
curRange *= int64(stepSize)
}
return ranges
}
// Compactor provides compaction against an underlying storage
// of time series data.
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type Compactor interface {
// Plan returns a set of directories that can be compacted concurrently.
// The directories can be overlapping.
// Results returned when compactions are in progress are undefined.
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Plan(dir string) ([]string, error)
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// Write persists one or more Blocks into a directory.
// No Block is written when resulting Block has 0 samples and returns an empty slice.
// Prometheus always return one or no block. The interface allows returning more than one
// block for downstream users to experiment with compactor.
Write(dest string, b BlockReader, mint, maxt int64, base *BlockMeta) ([]ulid.ULID, error)
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// Compact runs compaction against the provided directories. Must
// only be called concurrently with results of Plan().
// Can optionally pass a list of already open blocks,
// to avoid having to reopen them.
// Prometheus always return one or no block. The interface allows returning more than one
// block for downstream users to experiment with compactor.
// When one resulting Block has 0 samples
// * No block is written.
// * The source dirs are marked Deletable.
// * Block is not included in the result.
Compact(dest string, dirs []string, open []*Block) ([]ulid.ULID, error)
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}
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// LeveledCompactor implements the Compactor interface.
type LeveledCompactor struct {
metrics *CompactorMetrics
logger *slog.Logger
ranges []int64
chunkPool chunkenc.Pool
ctx context.Context
maxBlockChunkSegmentSize int64
mergeFunc storage.VerticalChunkSeriesMergeFunc
postingsEncoder index.PostingsEncoder
postingsDecoderFactory PostingsDecoderFactory
enableOverlappingCompaction bool
}
type CompactorMetrics struct {
Ran prometheus.Counter
PopulatingBlocks prometheus.Gauge
OverlappingBlocks prometheus.Counter
Duration prometheus.Histogram
ChunkSize prometheus.Histogram
ChunkSamples prometheus.Histogram
ChunkRange prometheus.Histogram
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}
// NewCompactorMetrics initializes metrics for Compactor.
func NewCompactorMetrics(r prometheus.Registerer) *CompactorMetrics {
m := &CompactorMetrics{}
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m.Ran = prometheus.NewCounter(prometheus.CounterOpts{
Name: "prometheus_tsdb_compactions_total",
Help: "Total number of compactions that were executed for the partition.",
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})
m.PopulatingBlocks = prometheus.NewGauge(prometheus.GaugeOpts{
Name: "prometheus_tsdb_compaction_populating_block",
Help: "Set to 1 when a block is currently being written to the disk.",
})
m.OverlappingBlocks = prometheus.NewCounter(prometheus.CounterOpts{
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
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Name: "prometheus_tsdb_vertical_compactions_total",
Help: "Total number of compactions done on overlapping blocks.",
})
m.Duration = prometheus.NewHistogram(prometheus.HistogramOpts{
Name: "prometheus_tsdb_compaction_duration_seconds",
Help: "Duration of compaction runs",
Buckets: prometheus.ExponentialBuckets(1, 2, 14),
NativeHistogramBucketFactor: 1.1,
NativeHistogramMaxBucketNumber: 100,
NativeHistogramMinResetDuration: 1 * time.Hour,
})
m.ChunkSize = prometheus.NewHistogram(prometheus.HistogramOpts{
Name: "prometheus_tsdb_compaction_chunk_size_bytes",
Help: "Final size of chunks on their first compaction",
Buckets: prometheus.ExponentialBuckets(32, 1.5, 12),
})
m.ChunkSamples = prometheus.NewHistogram(prometheus.HistogramOpts{
Name: "prometheus_tsdb_compaction_chunk_samples",
Help: "Final number of samples on their first compaction",
Buckets: prometheus.ExponentialBuckets(4, 1.5, 12),
})
m.ChunkRange = prometheus.NewHistogram(prometheus.HistogramOpts{
Name: "prometheus_tsdb_compaction_chunk_range_seconds",
Help: "Final time range of chunks on their first compaction",
Buckets: prometheus.ExponentialBuckets(100, 4, 10),
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})
if r != nil {
r.MustRegister(
m.Ran,
m.PopulatingBlocks,
m.OverlappingBlocks,
m.Duration,
m.ChunkRange,
m.ChunkSamples,
m.ChunkSize,
)
}
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return m
}
type LeveledCompactorOptions struct {
// PE specifies the postings encoder. It is called when compactor is writing out the postings for a label name/value pair during compaction.
// If it is nil then the default encoder is used. At the moment that is the "raw" encoder. See index.EncodePostingsRaw for more.
PE index.PostingsEncoder
// PD specifies the postings decoder factory to return different postings decoder based on BlockMeta. It is called when opening a block or opening the index file.
// If it is nil then a default decoder is used, compatible with Prometheus v2.
PD PostingsDecoderFactory
// MaxBlockChunkSegmentSize is the max block chunk segment size. If it is 0 then the default chunks.DefaultChunkSegmentSize is used.
MaxBlockChunkSegmentSize int64
// MergeFunc is used for merging series together in vertical compaction. By default storage.NewCompactingChunkSeriesMerger(storage.ChainedSeriesMerge) is used.
MergeFunc storage.VerticalChunkSeriesMergeFunc
// EnableOverlappingCompaction enables compaction of overlapping blocks. In Prometheus it is always enabled.
// It is useful for downstream projects like Mimir, Cortex, Thanos where they have a separate component that does compaction.
EnableOverlappingCompaction bool
}
type PostingsDecoderFactory func(meta *BlockMeta) index.PostingsDecoder
func DefaultPostingsDecoderFactory(_ *BlockMeta) index.PostingsDecoder {
return index.DecodePostingsRaw
}
func NewLeveledCompactorWithChunkSize(ctx context.Context, r prometheus.Registerer, l *slog.Logger, ranges []int64, pool chunkenc.Pool, maxBlockChunkSegmentSize int64, mergeFunc storage.VerticalChunkSeriesMergeFunc) (*LeveledCompactor, error) {
return NewLeveledCompactorWithOptions(ctx, r, l, ranges, pool, LeveledCompactorOptions{
MaxBlockChunkSegmentSize: maxBlockChunkSegmentSize,
MergeFunc: mergeFunc,
EnableOverlappingCompaction: true,
})
}
func NewLeveledCompactor(ctx context.Context, r prometheus.Registerer, l *slog.Logger, ranges []int64, pool chunkenc.Pool, mergeFunc storage.VerticalChunkSeriesMergeFunc) (*LeveledCompactor, error) {
return NewLeveledCompactorWithOptions(ctx, r, l, ranges, pool, LeveledCompactorOptions{
MergeFunc: mergeFunc,
EnableOverlappingCompaction: true,
})
}
func NewLeveledCompactorWithOptions(ctx context.Context, r prometheus.Registerer, l *slog.Logger, ranges []int64, pool chunkenc.Pool, opts LeveledCompactorOptions) (*LeveledCompactor, error) {
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if len(ranges) == 0 {
return nil, errors.New("at least one range must be provided")
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}
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if pool == nil {
pool = chunkenc.NewPool()
}
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
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if l == nil {
l = promslog.NewNopLogger()
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
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}
mergeFunc := opts.MergeFunc
if mergeFunc == nil {
mergeFunc = storage.NewCompactingChunkSeriesMerger(storage.ChainedSeriesMerge)
}
maxBlockChunkSegmentSize := opts.MaxBlockChunkSegmentSize
if maxBlockChunkSegmentSize == 0 {
maxBlockChunkSegmentSize = chunks.DefaultChunkSegmentSize
}
pe := opts.PE
if pe == nil {
pe = index.EncodePostingsRaw
}
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return &LeveledCompactor{
ranges: ranges,
chunkPool: pool,
logger: l,
metrics: NewCompactorMetrics(r),
ctx: ctx,
maxBlockChunkSegmentSize: maxBlockChunkSegmentSize,
mergeFunc: mergeFunc,
postingsEncoder: pe,
postingsDecoderFactory: opts.PD,
enableOverlappingCompaction: opts.EnableOverlappingCompaction,
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}, nil
}
type dirMeta struct {
dir string
meta *BlockMeta
}
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// Plan returns a list of compactable blocks in the provided directory.
func (c *LeveledCompactor) Plan(dir string) ([]string, error) {
dirs, err := blockDirs(dir)
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if err != nil {
return nil, err
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}
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if len(dirs) < 1 {
return nil, nil
}
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var dms []dirMeta
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for _, dir := range dirs {
meta, _, err := readMetaFile(dir)
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if err != nil {
return nil, err
}
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dms = append(dms, dirMeta{dir, meta})
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}
return c.plan(dms)
}
func (c *LeveledCompactor) plan(dms []dirMeta) ([]string, error) {
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slices.SortFunc(dms, func(a, b dirMeta) int {
switch {
case a.meta.MinTime < b.meta.MinTime:
return -1
case a.meta.MinTime > b.meta.MinTime:
return 1
default:
return 0
}
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})
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
res := c.selectOverlappingDirs(dms)
if len(res) > 0 {
return res, nil
}
// No overlapping blocks, do compaction the usual way.
// We do not include a recently created block with max(minTime), so the block which was just created from WAL.
// This gives users a window of a full block size to piece-wise backup new data without having to care about data overlap.
dms = dms[:len(dms)-1]
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for _, dm := range c.selectDirs(dms) {
res = append(res, dm.dir)
}
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if len(res) > 0 {
return res, nil
}
// Compact any blocks with big enough time range that have >5% tombstones.
for i := len(dms) - 1; i >= 0; i-- {
meta := dms[i].meta
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if meta.MaxTime-meta.MinTime < c.ranges[len(c.ranges)/2] {
// If the block is entirely deleted, then we don't care about the block being big enough.
// TODO: This is assuming a single tombstone is for a distinct series, which might not be true.
if meta.Stats.NumTombstones > 0 && meta.Stats.NumTombstones >= meta.Stats.NumSeries {
return []string{dms[i].dir}, nil
}
break
}
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if float64(meta.Stats.NumTombstones)/float64(meta.Stats.NumSeries+1) > 0.05 {
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return []string{dms[i].dir}, nil
}
}
return nil, nil
}
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// selectDirs returns the dir metas that should be compacted into a single new block.
// If only a single block range is configured, the result is always nil.
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func (c *LeveledCompactor) selectDirs(ds []dirMeta) []dirMeta {
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if len(c.ranges) < 2 || len(ds) < 1 {
return nil
}
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highTime := ds[len(ds)-1].meta.MinTime
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for _, iv := range c.ranges[1:] {
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parts := splitByRange(ds, iv)
if len(parts) == 0 {
continue
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}
Outer:
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for _, p := range parts {
// Do not select the range if it has a block whose compaction failed.
for _, dm := range p {
if dm.meta.Compaction.Failed {
continue Outer
}
}
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mint := p[0].meta.MinTime
maxt := p[len(p)-1].meta.MaxTime
// Pick the range of blocks if it spans the full range (potentially with gaps)
// or is before the most recent block.
// This ensures we don't compact blocks prematurely when another one of the same
// size still fits in the range.
if (maxt-mint == iv || maxt <= highTime) && len(p) > 1 {
return p
}
}
}
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return nil
}
// selectOverlappingDirs returns all dirs with overlapping time ranges.
// It expects sorted input by mint and returns the overlapping dirs in the same order as received.
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
func (c *LeveledCompactor) selectOverlappingDirs(ds []dirMeta) []string {
if !c.enableOverlappingCompaction {
return nil
}
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
if len(ds) < 2 {
return nil
}
var overlappingDirs []string
globalMaxt := ds[0].meta.MaxTime
for i, d := range ds[1:] {
if d.meta.MinTime < globalMaxt {
if len(overlappingDirs) == 0 { // When it is the first overlap, need to add the last one as well.
overlappingDirs = append(overlappingDirs, ds[i].dir)
}
overlappingDirs = append(overlappingDirs, d.dir)
} else if len(overlappingDirs) > 0 {
break
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
}
if d.meta.MaxTime > globalMaxt {
globalMaxt = d.meta.MaxTime
}
}
return overlappingDirs
}
2017-08-03 09:33:13 -07:00
// splitByRange splits the directories by the time range. The range sequence starts at 0.
//
// For example, if we have blocks [0-10, 10-20, 50-60, 90-100] and the split range tr is 30
// it returns [0-10, 10-20], [50-60], [90-100].
func splitByRange(ds []dirMeta, tr int64) [][]dirMeta {
var splitDirs [][]dirMeta
for i := 0; i < len(ds); {
2017-08-03 09:33:13 -07:00
var (
group []dirMeta
t0 int64
m = ds[i].meta
)
// Compute start of aligned time range of size tr closest to the current block's start.
2017-07-13 07:13:59 -07:00
if m.MinTime >= 0 {
t0 = tr * (m.MinTime / tr)
} else {
t0 = tr * ((m.MinTime - tr + 1) / tr)
}
// Skip blocks that don't fall into the range. This can happen via mis-alignment or
// by being a multiple of the intended range.
if m.MaxTime > t0+tr {
2017-07-13 07:13:59 -07:00
i++
continue
}
2017-01-19 10:45:52 -08:00
// Add all dirs to the current group that are within [t0, t0+tr].
for ; i < len(ds); i++ {
2017-07-13 07:13:59 -07:00
// Either the block falls into the next range or doesn't fit at all (checked above).
if ds[i].meta.MaxTime > t0+tr {
break
}
group = append(group, ds[i])
2017-01-19 10:45:52 -08:00
}
if len(group) > 0 {
splitDirs = append(splitDirs, group)
}
}
return splitDirs
2017-01-03 01:09:20 -08:00
}
// CompactBlockMetas merges many block metas into one, combining its source blocks together
// and adjusting compaction level. Min/Max time of result block meta covers all input blocks.
func CompactBlockMetas(uid ulid.ULID, blocks ...*BlockMeta) *BlockMeta {
res := &BlockMeta{
ULID: uid,
}
sources := map[ulid.ULID]struct{}{}
mint := blocks[0].MinTime
maxt := blocks[0].MaxTime
2017-01-03 06:43:26 -08:00
for _, b := range blocks {
if b.MinTime < mint {
mint = b.MinTime
}
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
if b.MaxTime > maxt {
maxt = b.MaxTime
}
2017-08-09 02:10:29 -07:00
if b.Compaction.Level > res.Compaction.Level {
res.Compaction.Level = b.Compaction.Level
}
for _, s := range b.Compaction.Sources {
sources[s] = struct{}{}
}
res.Compaction.Parents = append(res.Compaction.Parents, BlockDesc{
ULID: b.ULID,
MinTime: b.MinTime,
MaxTime: b.MaxTime,
})
}
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res.Compaction.Level++
for s := range sources {
res.Compaction.Sources = append(res.Compaction.Sources, s)
}
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slices.SortFunc(res.Compaction.Sources, func(a, b ulid.ULID) int {
return a.Compare(b)
})
res.MinTime = mint
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
res.MaxTime = maxt
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return res
}
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// Compact creates a new block in the compactor's directory from the blocks in the
// provided directories.
func (c *LeveledCompactor) Compact(dest string, dirs []string, open []*Block) ([]ulid.ULID, error) {
return c.CompactWithBlockPopulator(dest, dirs, open, DefaultBlockPopulator{})
}
func (c *LeveledCompactor) CompactWithBlockPopulator(dest string, dirs []string, open []*Block, blockPopulator BlockPopulator) ([]ulid.ULID, error) {
var (
blocks []BlockReader
bs []*Block
metas []*BlockMeta
uids []string
)
start := time.Now()
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for _, d := range dirs {
meta, _, err := readMetaFile(d)
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if err != nil {
return nil, err
2017-03-02 00:13:29 -08:00
}
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var b *Block
// Use already open blocks if we can, to avoid
// having the index data in memory twice.
for _, o := range open {
if meta.ULID == o.Meta().ULID {
b = o
break
}
}
if b == nil {
var err error
b, err = OpenBlock(c.logger, d, c.chunkPool, c.postingsDecoderFactory)
if err != nil {
return nil, err
}
defer b.Close()
}
metas = append(metas, meta)
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blocks = append(blocks, b)
bs = append(bs, b)
uids = append(uids, meta.ULID.String())
2017-03-02 00:13:29 -08:00
}
uid := ulid.MustNew(ulid.Now(), rand.Reader)
meta := CompactBlockMetas(uid, metas...)
err := c.write(dest, meta, blockPopulator, blocks...)
if err == nil {
if meta.Stats.NumSamples == 0 {
for _, b := range bs {
b.meta.Compaction.Deletable = true
n, err := writeMetaFile(c.logger, b.dir, &b.meta)
if err != nil {
c.logger.Error(
"Failed to write 'Deletable' to meta file after compaction",
"ulid", b.meta.ULID,
)
}
b.numBytesMeta = n
}
c.logger.Info(
"compact blocks resulted in empty block",
"count", len(blocks),
"sources", fmt.Sprintf("%v", uids),
"duration", time.Since(start),
)
return nil, nil
}
c.logger.Info(
"compact blocks",
"count", len(blocks),
"mint", meta.MinTime,
"maxt", meta.MaxTime,
"ulid", meta.ULID,
"sources", fmt.Sprintf("%v", uids),
"duration", time.Since(start),
)
return []ulid.ULID{uid}, nil
}
errs := tsdb_errors.NewMulti(err)
if !errors.Is(err, context.Canceled) {
for _, b := range bs {
if err := b.setCompactionFailed(); err != nil {
errs.Add(fmt.Errorf("setting compaction failed for block: %s: %w", b.Dir(), err))
}
}
}
return nil, errs.Err()
}
func (c *LeveledCompactor) Write(dest string, b BlockReader, mint, maxt int64, base *BlockMeta) ([]ulid.ULID, error) {
start := time.Now()
uid := ulid.MustNew(ulid.Now(), rand.Reader)
meta := &BlockMeta{
ULID: uid,
MinTime: mint,
MaxTime: maxt,
}
meta.Compaction.Level = 1
meta.Compaction.Sources = []ulid.ULID{uid}
if base != nil {
meta.Compaction.Parents = []BlockDesc{
{ULID: base.ULID, MinTime: base.MinTime, MaxTime: base.MaxTime},
}
if base.Compaction.FromOutOfOrder() {
meta.Compaction.SetOutOfOrder()
}
}
err := c.write(dest, meta, DefaultBlockPopulator{}, b)
if err != nil {
return nil, err
}
if meta.Stats.NumSamples == 0 {
c.logger.Info(
"write block resulted in empty block",
"mint", meta.MinTime,
"maxt", meta.MaxTime,
"duration", time.Since(start),
)
return nil, nil
}
c.logger.Info(
"write block",
"mint", meta.MinTime,
"maxt", meta.MaxTime,
"ulid", meta.ULID,
"duration", time.Since(start),
"ooo", meta.Compaction.FromOutOfOrder(),
)
return []ulid.ULID{uid}, nil
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}
// instrumentedChunkWriter is used for level 1 compactions to record statistics
// about compacted chunks.
type instrumentedChunkWriter struct {
ChunkWriter
size prometheus.Histogram
samples prometheus.Histogram
trange prometheus.Histogram
}
func (w *instrumentedChunkWriter) WriteChunks(chunks ...chunks.Meta) error {
for _, c := range chunks {
w.size.Observe(float64(len(c.Chunk.Bytes())))
w.samples.Observe(float64(c.Chunk.NumSamples()))
w.trange.Observe(float64(c.MaxTime - c.MinTime))
}
return w.ChunkWriter.WriteChunks(chunks...)
}
// write creates a new block that is the union of the provided blocks into dir.
func (c *LeveledCompactor) write(dest string, meta *BlockMeta, blockPopulator BlockPopulator, blocks ...BlockReader) (err error) {
dir := filepath.Join(dest, meta.ULID.String())
tmp := dir + tmpForCreationBlockDirSuffix
var closers []io.Closer
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defer func(t time.Time) {
err = tsdb_errors.NewMulti(err, tsdb_errors.CloseAll(closers)).Err()
// RemoveAll returns no error when tmp doesn't exist so it is safe to always run it.
if err := os.RemoveAll(tmp); err != nil {
c.logger.Error("removed tmp folder after failed compaction", "err", err.Error())
}
c.metrics.Ran.Inc()
c.metrics.Duration.Observe(time.Since(t).Seconds())
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}(time.Now())
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if err = os.RemoveAll(tmp); err != nil {
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return err
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}
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if err = os.MkdirAll(tmp, 0o777); err != nil {
return err
}
// Populate chunk and index files into temporary directory with
// data of all blocks.
var chunkw ChunkWriter
chunkw, err = chunks.NewWriterWithSegSize(chunkDir(tmp), c.maxBlockChunkSegmentSize)
if err != nil {
return fmt.Errorf("open chunk writer: %w", err)
}
closers = append(closers, chunkw)
// Record written chunk sizes on level 1 compactions.
if meta.Compaction.Level == 1 {
chunkw = &instrumentedChunkWriter{
ChunkWriter: chunkw,
size: c.metrics.ChunkSize,
samples: c.metrics.ChunkSamples,
trange: c.metrics.ChunkRange,
}
}
indexw, err := index.NewWriterWithEncoder(c.ctx, filepath.Join(tmp, indexFilename), c.postingsEncoder)
if err != nil {
return fmt.Errorf("open index writer: %w", err)
}
closers = append(closers, indexw)
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if err := blockPopulator.PopulateBlock(c.ctx, c.metrics, c.logger, c.chunkPool, c.mergeFunc, blocks, meta, indexw, chunkw, AllSortedPostings); err != nil {
return fmt.Errorf("populate block: %w", err)
2017-01-03 06:43:26 -08:00
}
select {
case <-c.ctx.Done():
return c.ctx.Err()
default:
}
// We are explicitly closing them here to check for error even
// though these are covered under defer. This is because in Windows,
// you cannot delete these unless they are closed and the defer is to
// make sure they are closed if the function exits due to an error above.
errs := tsdb_errors.NewMulti()
for _, w := range closers {
errs.Add(w.Close())
}
closers = closers[:0] // Avoid closing the writers twice in the defer.
if errs.Err() != nil {
return errs.Err()
2017-01-03 06:43:26 -08:00
}
// Populated block is empty, so exit early.
if meta.Stats.NumSamples == 0 {
return nil
}
if _, err = writeMetaFile(c.logger, tmp, meta); err != nil {
return fmt.Errorf("write merged meta: %w", err)
}
// Create an empty tombstones file.
if _, err := tombstones.WriteFile(c.logger, tmp, tombstones.NewMemTombstones()); err != nil {
return fmt.Errorf("write new tombstones file: %w", err)
}
2017-10-04 01:42:25 -07:00
df, err := fileutil.OpenDir(tmp)
if err != nil {
return fmt.Errorf("open temporary block dir: %w", err)
}
defer func() {
if df != nil {
df.Close()
}
}()
2017-06-11 15:05:04 -07:00
if err := df.Sync(); err != nil {
return fmt.Errorf("sync temporary dir file: %w", err)
}
// Close temp dir before rename block dir (for windows platform).
if err = df.Close(); err != nil {
return fmt.Errorf("close temporary dir: %w", err)
}
df = nil
// Block successfully written, make it visible in destination dir by moving it from tmp one.
if err := fileutil.Replace(tmp, dir); err != nil {
return fmt.Errorf("rename block dir: %w", err)
2017-10-04 01:42:25 -07:00
}
return nil
2017-01-03 06:43:26 -08:00
}
type BlockPopulator interface {
PopulateBlock(ctx context.Context, metrics *CompactorMetrics, logger *slog.Logger, chunkPool chunkenc.Pool, mergeFunc storage.VerticalChunkSeriesMergeFunc, blocks []BlockReader, meta *BlockMeta, indexw IndexWriter, chunkw ChunkWriter, postingsFunc IndexReaderPostingsFunc) error
}
// IndexReaderPostingsFunc is a function to get a sorted posting iterator from a given index reader.
type IndexReaderPostingsFunc func(ctx context.Context, reader IndexReader) index.Postings
// AllSortedPostings returns a sorted all posting iterator from the input index reader.
func AllSortedPostings(ctx context.Context, reader IndexReader) index.Postings {
k, v := index.AllPostingsKey()
all, err := reader.Postings(ctx, k, v)
if err != nil {
return index.ErrPostings(err)
}
return reader.SortedPostings(all)
}
type DefaultBlockPopulator struct{}
// PopulateBlock fills the index and chunk writers with new data gathered as the union
// of the provided blocks. It returns meta information for the new block.
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
// It expects sorted blocks input by mint.
func (c DefaultBlockPopulator) PopulateBlock(ctx context.Context, metrics *CompactorMetrics, logger *slog.Logger, chunkPool chunkenc.Pool, mergeFunc storage.VerticalChunkSeriesMergeFunc, blocks []BlockReader, meta *BlockMeta, indexw IndexWriter, chunkw ChunkWriter, postingsFunc IndexReaderPostingsFunc) (err error) {
if len(blocks) == 0 {
return errors.New("cannot populate block from no readers")
}
var (
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
sets []storage.ChunkSeriesSet
Stream symbols during compaction. (#6468) Rather than buffer up symbols in RAM, do it one by one during compaction. Then use the reader's symbol handling for symbol lookups during the rest of the index write. There is some slowdown in compaction, due to having to look through a file rather than a hash lookup. This is noise to the overall cost of compacting series with thousands of samples though. benchmark old ns/op new ns/op delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 539917175 675341565 +25.08% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 2441815993 2477453524 +1.46% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3978543559 3922909687 -1.40% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 8430219716 8586610007 +1.86% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 1786424591 1909552782 +6.89% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 5328998202 6020839950 +12.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 10085059958 11085278690 +9.92% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 25497010155 27018079806 +5.97% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 2427391406 2817217987 +16.06% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 2592965497 2538805050 -2.09% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 2437388343 2668012858 +9.46% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 2317095324 2787423966 +20.30% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 2600239857 2096973860 -19.35% benchmark old allocs new allocs delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 500851 470794 -6.00% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 821527 791451 -3.66% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 1141562 1111508 -2.63% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 2141576 2111504 -1.40% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 871466 841424 -3.45% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 1941428 1911415 -1.55% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3071573 3041510 -0.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 6771648 6741509 -0.45% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 731493 824888 +12.77% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 793918 887311 +11.76% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 811842 905204 +11.50% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 832244 925081 +11.16% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 921553 1019162 +10.59% benchmark old bytes new bytes delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 40532648 35698276 -11.93% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 60340216 53409568 -11.49% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 81087336 72065552 -11.13% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 142485576 120878544 -15.16% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 208661368 203831136 -2.31% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 347345904 340484696 -1.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 585185856 576244648 -1.53% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 1357641792 1358966528 +0.10% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 126486664 119666744 -5.39% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 122323192 115117224 -5.89% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 126404504 119469864 -5.49% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 119047832 112230408 -5.73% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 136576016 116634800 -14.60% Signed-off-by: Brian Brazil <brian.brazil@robustperception.io>
2019-12-17 11:49:54 -08:00
symbols index.StringIter
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
closers []io.Closer
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
overlapping bool
)
defer func() {
errs := tsdb_errors.NewMulti(err)
if cerr := tsdb_errors.CloseAll(closers); cerr != nil {
errs.Add(fmt.Errorf("close: %w", cerr))
}
err = errs.Err()
metrics.PopulatingBlocks.Set(0)
}()
metrics.PopulatingBlocks.Set(1)
globalMaxt := blocks[0].Meta().MaxTime
2017-01-03 06:43:26 -08:00
for i, b := range blocks {
select {
case <-ctx.Done():
return ctx.Err()
default:
}
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
if !overlapping {
if i > 0 && b.Meta().MinTime < globalMaxt {
metrics.OverlappingBlocks.Inc()
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
overlapping = true
logger.Info("Found overlapping blocks during compaction", "ulid", meta.ULID)
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
}
if b.Meta().MaxTime > globalMaxt {
globalMaxt = b.Meta().MaxTime
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
}
}
indexr, err := b.Index()
if err != nil {
return fmt.Errorf("open index reader for block %+v: %w", b.Meta(), err)
}
closers = append(closers, indexr)
chunkr, err := b.Chunks()
if err != nil {
return fmt.Errorf("open chunk reader for block %+v: %w", b.Meta(), err)
}
closers = append(closers, chunkr)
tombsr, err := b.Tombstones()
if err != nil {
return fmt.Errorf("open tombstone reader for block %+v: %w", b.Meta(), err)
}
closers = append(closers, tombsr)
postings := postingsFunc(ctx, indexr)
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
// Blocks meta is half open: [min, max), so subtract 1 to ensure we don't hold samples with exact meta.MaxTime timestamp.
sets = append(sets, NewBlockChunkSeriesSet(b.Meta().ULID, indexr, chunkr, tombsr, postings, meta.MinTime, meta.MaxTime-1, false))
Stream symbols during compaction. (#6468) Rather than buffer up symbols in RAM, do it one by one during compaction. Then use the reader's symbol handling for symbol lookups during the rest of the index write. There is some slowdown in compaction, due to having to look through a file rather than a hash lookup. This is noise to the overall cost of compacting series with thousands of samples though. benchmark old ns/op new ns/op delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 539917175 675341565 +25.08% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 2441815993 2477453524 +1.46% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3978543559 3922909687 -1.40% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 8430219716 8586610007 +1.86% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 1786424591 1909552782 +6.89% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 5328998202 6020839950 +12.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 10085059958 11085278690 +9.92% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 25497010155 27018079806 +5.97% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 2427391406 2817217987 +16.06% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 2592965497 2538805050 -2.09% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 2437388343 2668012858 +9.46% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 2317095324 2787423966 +20.30% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 2600239857 2096973860 -19.35% benchmark old allocs new allocs delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 500851 470794 -6.00% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 821527 791451 -3.66% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 1141562 1111508 -2.63% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 2141576 2111504 -1.40% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 871466 841424 -3.45% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 1941428 1911415 -1.55% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3071573 3041510 -0.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 6771648 6741509 -0.45% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 731493 824888 +12.77% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 793918 887311 +11.76% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 811842 905204 +11.50% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 832244 925081 +11.16% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 921553 1019162 +10.59% benchmark old bytes new bytes delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 40532648 35698276 -11.93% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 60340216 53409568 -11.49% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 81087336 72065552 -11.13% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 142485576 120878544 -15.16% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 208661368 203831136 -2.31% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 347345904 340484696 -1.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 585185856 576244648 -1.53% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 1357641792 1358966528 +0.10% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 126486664 119666744 -5.39% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 122323192 115117224 -5.89% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 126404504 119469864 -5.49% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 119047832 112230408 -5.73% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 136576016 116634800 -14.60% Signed-off-by: Brian Brazil <brian.brazil@robustperception.io>
2019-12-17 11:49:54 -08:00
syms := indexr.Symbols()
2017-01-03 06:43:26 -08:00
if i == 0 {
Stream symbols during compaction. (#6468) Rather than buffer up symbols in RAM, do it one by one during compaction. Then use the reader's symbol handling for symbol lookups during the rest of the index write. There is some slowdown in compaction, due to having to look through a file rather than a hash lookup. This is noise to the overall cost of compacting series with thousands of samples though. benchmark old ns/op new ns/op delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 539917175 675341565 +25.08% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 2441815993 2477453524 +1.46% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3978543559 3922909687 -1.40% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 8430219716 8586610007 +1.86% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 1786424591 1909552782 +6.89% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 5328998202 6020839950 +12.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 10085059958 11085278690 +9.92% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 25497010155 27018079806 +5.97% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 2427391406 2817217987 +16.06% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 2592965497 2538805050 -2.09% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 2437388343 2668012858 +9.46% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 2317095324 2787423966 +20.30% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 2600239857 2096973860 -19.35% benchmark old allocs new allocs delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 500851 470794 -6.00% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 821527 791451 -3.66% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 1141562 1111508 -2.63% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 2141576 2111504 -1.40% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 871466 841424 -3.45% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 1941428 1911415 -1.55% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3071573 3041510 -0.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 6771648 6741509 -0.45% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 731493 824888 +12.77% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 793918 887311 +11.76% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 811842 905204 +11.50% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 832244 925081 +11.16% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 921553 1019162 +10.59% benchmark old bytes new bytes delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 40532648 35698276 -11.93% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 60340216 53409568 -11.49% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 81087336 72065552 -11.13% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 142485576 120878544 -15.16% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 208661368 203831136 -2.31% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 347345904 340484696 -1.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 585185856 576244648 -1.53% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 1357641792 1358966528 +0.10% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 126486664 119666744 -5.39% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 122323192 115117224 -5.89% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 126404504 119469864 -5.49% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 119047832 112230408 -5.73% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 136576016 116634800 -14.60% Signed-off-by: Brian Brazil <brian.brazil@robustperception.io>
2019-12-17 11:49:54 -08:00
symbols = syms
2017-01-03 06:43:26 -08:00
continue
}
symbols = NewMergedStringIter(symbols, syms)
}
Stream symbols during compaction. (#6468) Rather than buffer up symbols in RAM, do it one by one during compaction. Then use the reader's symbol handling for symbol lookups during the rest of the index write. There is some slowdown in compaction, due to having to look through a file rather than a hash lookup. This is noise to the overall cost of compacting series with thousands of samples though. benchmark old ns/op new ns/op delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 539917175 675341565 +25.08% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 2441815993 2477453524 +1.46% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3978543559 3922909687 -1.40% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 8430219716 8586610007 +1.86% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 1786424591 1909552782 +6.89% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 5328998202 6020839950 +12.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 10085059958 11085278690 +9.92% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 25497010155 27018079806 +5.97% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 2427391406 2817217987 +16.06% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 2592965497 2538805050 -2.09% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 2437388343 2668012858 +9.46% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 2317095324 2787423966 +20.30% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 2600239857 2096973860 -19.35% benchmark old allocs new allocs delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 500851 470794 -6.00% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 821527 791451 -3.66% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 1141562 1111508 -2.63% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 2141576 2111504 -1.40% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 871466 841424 -3.45% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 1941428 1911415 -1.55% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3071573 3041510 -0.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 6771648 6741509 -0.45% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 731493 824888 +12.77% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 793918 887311 +11.76% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 811842 905204 +11.50% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 832244 925081 +11.16% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 921553 1019162 +10.59% benchmark old bytes new bytes delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 40532648 35698276 -11.93% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 60340216 53409568 -11.49% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 81087336 72065552 -11.13% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 142485576 120878544 -15.16% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 208661368 203831136 -2.31% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 347345904 340484696 -1.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 585185856 576244648 -1.53% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 1357641792 1358966528 +0.10% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 126486664 119666744 -5.39% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 122323192 115117224 -5.89% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 126404504 119469864 -5.49% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 119047832 112230408 -5.73% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 136576016 116634800 -14.60% Signed-off-by: Brian Brazil <brian.brazil@robustperception.io>
2019-12-17 11:49:54 -08:00
for symbols.Next() {
if err := indexw.AddSymbol(symbols.At()); err != nil {
return fmt.Errorf("add symbol: %w", err)
Stream symbols during compaction. (#6468) Rather than buffer up symbols in RAM, do it one by one during compaction. Then use the reader's symbol handling for symbol lookups during the rest of the index write. There is some slowdown in compaction, due to having to look through a file rather than a hash lookup. This is noise to the overall cost of compacting series with thousands of samples though. benchmark old ns/op new ns/op delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 539917175 675341565 +25.08% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 2441815993 2477453524 +1.46% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3978543559 3922909687 -1.40% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 8430219716 8586610007 +1.86% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 1786424591 1909552782 +6.89% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 5328998202 6020839950 +12.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 10085059958 11085278690 +9.92% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 25497010155 27018079806 +5.97% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 2427391406 2817217987 +16.06% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 2592965497 2538805050 -2.09% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 2437388343 2668012858 +9.46% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 2317095324 2787423966 +20.30% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 2600239857 2096973860 -19.35% benchmark old allocs new allocs delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 500851 470794 -6.00% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 821527 791451 -3.66% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 1141562 1111508 -2.63% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 2141576 2111504 -1.40% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 871466 841424 -3.45% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 1941428 1911415 -1.55% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3071573 3041510 -0.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 6771648 6741509 -0.45% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 731493 824888 +12.77% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 793918 887311 +11.76% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 811842 905204 +11.50% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 832244 925081 +11.16% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 921553 1019162 +10.59% benchmark old bytes new bytes delta BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 40532648 35698276 -11.93% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 60340216 53409568 -11.49% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 81087336 72065552 -11.13% BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 142485576 120878544 -15.16% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 208661368 203831136 -2.31% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 347345904 340484696 -1.98% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 585185856 576244648 -1.53% BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 1357641792 1358966528 +0.10% BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 126486664 119666744 -5.39% BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 122323192 115117224 -5.89% BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 126404504 119469864 -5.49% BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 119047832 112230408 -5.73% BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 136576016 116634800 -14.60% Signed-off-by: Brian Brazil <brian.brazil@robustperception.io>
2019-12-17 11:49:54 -08:00
}
}
if err := symbols.Err(); err != nil {
return fmt.Errorf("next symbol: %w", err)
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
var (
ref = storage.SeriesRef(0)
chks []chunks.Meta
chksIter chunks.Iterator
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
)
set := sets[0]
if len(sets) > 1 {
// Merge series using specified chunk series merger.
// The default one is the compacting series merger.
set = storage.NewMergeChunkSeriesSet(sets, 0, mergeFunc)
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
}
// Iterate over all sorted chunk series.
for set.Next() {
select {
case <-ctx.Done():
return ctx.Err()
default:
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
s := set.At()
chksIter = s.Iterator(chksIter)
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
chks = chks[:0]
for chksIter.Next() {
// We are not iterating in a streaming way over chunks as
// it's more efficient to do bulk write for index and
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
// chunk file purposes.
chks = append(chks, chksIter.At())
}
if err := chksIter.Err(); err != nil {
return fmt.Errorf("chunk iter: %w", err)
Vertical query merging and compaction (#370) * Vertical series iterator Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Select overlapped blocks first in compactor Plan() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Added vertical compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Code cleanup and comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix tests Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Add benchmark for compaction Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Perform vertical compaction only when blocks are overlapping. Actions for vertical compaction: * Sorting chunk metas * Calling chunks.MergeOverlappingChunks on the chunks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for vertical compaction * BenchmarkNormalCompaction => BenchmarkCompaction * Moved the benchmark from db_test.go to compact_test.go Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Benchmark for query iterator and seek for non overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Vertical query merge only for overlapping blocks Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Simplify logging in Compact(...) Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG.md Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Calculate overlapping inside populateBlock Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * MinTime and MaxTime for BlockReader. Using this to find overlapping blocks in populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Sort blocks w.r.t. MinTime in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping in LeveledCompactor.write() instead of returning bool Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Log about overlapping inside LeveledCompactor.populateBlock() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor createBlock to take optional []Series Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * review1 Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com> * Updated CHANGELOG and minor nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * nits Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Updated CHANGELOG Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Refactor iterator and seek benchmarks for Querier. Also has as overlapping blocks. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Additional test case Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * genSeries takes optional labels. Updated BenchmarkQueryIterator and BenchmarkQuerySeek. Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Split genSeries into genSeries and populateSeries Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Check error in benchmark Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Fix review comments Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in> * Warn about overlapping blocks in reload() Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
2019-02-14 05:29:41 -08:00
}
// Skip series with all deleted chunks.
if len(chks) == 0 {
continue
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
if err := chunkw.WriteChunks(chks...); err != nil {
return fmt.Errorf("write chunks: %w", err)
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
if err := indexw.AddSeries(ref, s.Labels(), chks...); err != nil {
return fmt.Errorf("add series: %w", err)
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
meta.Stats.NumChunks += uint64(len(chks))
meta.Stats.NumSeries++
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
for _, chk := range chks {
meta.Stats.NumSamples += uint64(chk.Chunk.NumSamples())
}
tsdb: Added ChunkQueryable implementations to db; unified MergeSeriesSets and vertical to single struct. (#7069) * tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating. Chained to https://github.com/prometheus/prometheus/pull/7059 * NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it. * Added single SeriesEntry / ChunkEntry for all series implementations. * Unified all vertical, and non vertical for compact and querying to single merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before) * Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples. * Refactored endpoint tests and querier tests to include subtests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed comments from Brian and Beorn. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed snapshot test and added chunk iterator support for DBReadOnly. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed race when iterating over Ats first. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed populate block tests. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed endpoints test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed test. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added test & fixed case of head open chunk. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed DBReadOnly tests and bug producing 1 sample chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added cases for partial block overlap for multiple full chunks. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Added extra tests for chunk meta after compaction. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fixed small vertical merge bug and added more tests for that. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
2020-07-31 08:03:02 -07:00
for _, chk := range chks {
if err := chunkPool.Put(chk.Chunk); err != nil {
return fmt.Errorf("put chunk: %w", err)
}
2017-08-08 08:35:34 -07:00
}
ref++
}
if err := set.Err(); err != nil {
return fmt.Errorf("iterate compaction set: %w", err)
}
return nil
}