prometheus/tsdb/docs/format/index.md
Brian Brazil 48d25e6fe7 Reduce memory used by postings offset table.
Rather than keeping the offset of each postings list, instead
keep the nth offset of the offset of the posting list. As postings
list offsets have always been sorted, we can then get to the closest
entry before the one we want an iterate forwards.

I haven't done much tuning on the 32 number, it was chosen to try
not to read through more than a 4k page of data.

Switch to a bulk interface for fetching postings. Use it to avoid having
to re-read parts of the posting offset table when querying lots of it.

For a index with what BenchmarkHeadPostingForMatchers uses RAM
for r.postings drops from 3.79MB to 80.19kB or about 48x.
Bytes allocated go down by 30%, and suprisingly CPU usage drops by
4-6% for typical queries too.

benchmark                                                               old ns/op      new ns/op      delta
BenchmarkPostingsForMatchers/Block/n="1"-4                              35231          36673          +4.09%
BenchmarkPostingsForMatchers/Block/n="1",j="foo"-4                      563380         540627         -4.04%
BenchmarkPostingsForMatchers/Block/j="foo",n="1"-4                      536782         534186         -0.48%
BenchmarkPostingsForMatchers/Block/n="1",j!="foo"-4                     533990         541550         +1.42%
BenchmarkPostingsForMatchers/Block/i=~".*"-4                            113374598      117969608      +4.05%
BenchmarkPostingsForMatchers/Block/i=~".+"-4                            146329884      139651442      -4.56%
BenchmarkPostingsForMatchers/Block/i=~""-4                              50346510       44961127       -10.70%
BenchmarkPostingsForMatchers/Block/i!=""-4                              41261550       35356165       -14.31%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",j="foo"-4              112544418      116904010      +3.87%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",i!="2",j="foo"-4       112487086      116864918      +3.89%
BenchmarkPostingsForMatchers/Block/n="1",i!=""-4                        41094758       35457904       -13.72%
BenchmarkPostingsForMatchers/Block/n="1",i!="",j="foo"-4                41906372       36151473       -13.73%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",j="foo"-4              147262414      140424800      -4.64%
BenchmarkPostingsForMatchers/Block/n="1",i=~"1.+",j="foo"-4             28615629       27872072       -2.60%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!="2",j="foo"-4       147117177      140462403      -4.52%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!~"2.*",j="foo"-4     175096826      167902298      -4.11%

benchmark                                                               old allocs     new allocs     delta
BenchmarkPostingsForMatchers/Block/n="1"-4                              4              6              +50.00%
BenchmarkPostingsForMatchers/Block/n="1",j="foo"-4                      7              11             +57.14%
BenchmarkPostingsForMatchers/Block/j="foo",n="1"-4                      7              11             +57.14%
BenchmarkPostingsForMatchers/Block/n="1",j!="foo"-4                     15             17             +13.33%
BenchmarkPostingsForMatchers/Block/i=~".*"-4                            100010         100012         +0.00%
BenchmarkPostingsForMatchers/Block/i=~".+"-4                            200069         200040         -0.01%
BenchmarkPostingsForMatchers/Block/i=~""-4                              200072         200045         -0.01%
BenchmarkPostingsForMatchers/Block/i!=""-4                              200070         200041         -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",j="foo"-4              100013         100017         +0.00%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",i!="2",j="foo"-4       100017         100023         +0.01%
BenchmarkPostingsForMatchers/Block/n="1",i!=""-4                        200073         200046         -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i!="",j="foo"-4                200075         200050         -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",j="foo"-4              200074         200049         -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i=~"1.+",j="foo"-4             111165         111150         -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!="2",j="foo"-4       200078         200055         -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!~"2.*",j="foo"-4     311282         311238         -0.01%

benchmark                                                               old bytes     new bytes     delta
BenchmarkPostingsForMatchers/Block/n="1"-4                              264           296           +12.12%
BenchmarkPostingsForMatchers/Block/n="1",j="foo"-4                      360           424           +17.78%
BenchmarkPostingsForMatchers/Block/j="foo",n="1"-4                      360           424           +17.78%
BenchmarkPostingsForMatchers/Block/n="1",j!="foo"-4                     520           552           +6.15%
BenchmarkPostingsForMatchers/Block/i=~".*"-4                            1600461       1600482       +0.00%
BenchmarkPostingsForMatchers/Block/i=~".+"-4                            24900801      17259077      -30.69%
BenchmarkPostingsForMatchers/Block/i=~""-4                              24900836      17259151      -30.69%
BenchmarkPostingsForMatchers/Block/i!=""-4                              24900760      17259048      -30.69%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",j="foo"-4              1600557       1600621       +0.00%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",i!="2",j="foo"-4       1600717       1600813       +0.01%
BenchmarkPostingsForMatchers/Block/n="1",i!=""-4                        24900856      17259176      -30.69%
BenchmarkPostingsForMatchers/Block/n="1",i!="",j="foo"-4                24900952      17259304      -30.69%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",j="foo"-4              24900993      17259333      -30.69%
BenchmarkPostingsForMatchers/Block/n="1",i=~"1.+",j="foo"-4             3788311       3142630       -17.04%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!="2",j="foo"-4       24901137      17259509      -30.69%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!~"2.*",j="foo"-4     28693086      20405680      -28.88%

Signed-off-by: Brian Brazil <brian.brazil@robustperception.io>
2019-12-11 19:59:31 +00:00

22 KiB

Index Disk Format

The following describes the format of the index file found in each block directory. It is terminated by a table of contents which serves as an entry point into the index.

┌────────────────────────────┬─────────────────────┐
│ magic(0xBAAAD700) <4b>     │ version(1) <1 byte> │
├────────────────────────────┴─────────────────────┤
│ ┌──────────────────────────────────────────────┐ │
│ │                 Symbol Table                 │ │
│ ├──────────────────────────────────────────────┤ │
│ │                    Series                    │ │
│ ├──────────────────────────────────────────────┤ │
│ │                 Label Index 1                │ │
│ ├──────────────────────────────────────────────┤ │
│ │                      ...                     │ │
│ ├──────────────────────────────────────────────┤ │
│ │                 Label Index N                │ │
│ ├──────────────────────────────────────────────┤ │
│ │                   Postings 1                 │ │
│ ├──────────────────────────────────────────────┤ │
│ │                      ...                     │ │
│ ├──────────────────────────────────────────────┤ │
│ │                   Postings N                 │ │
│ ├──────────────────────────────────────────────┤ │
│ │               Label Index Table              │ │
│ ├──────────────────────────────────────────────┤ │
│ │                 Postings Table               │ │
│ ├──────────────────────────────────────────────┤ │
│ │                      TOC                     │ │
│ └──────────────────────────────────────────────┘ │
└──────────────────────────────────────────────────┘

When the index is written, an arbitrary number of padding bytes may be added between the lined out main sections above. When sequentially scanning through the file, any zero bytes after a section's specified length must be skipped.

Most of the sections described below start with a len field. It always specifies the number of bytes just before the trailing CRC32 checksum. The checksum is always calculated over those len bytes.

Symbol Table

The symbol table holds a sorted list of deduplicated strings that occurred in label pairs of the stored series. They can be referenced from subsequent sections and significantly reduce the total index size.

The section contains a sequence of the string entries, each prefixed with the string's length in raw bytes. All strings are utf-8 encoded. Strings are referenced by sequential indexing. The strings are sorted in lexicographically ascending order.

┌────────────────────┬─────────────────────┐
│ len <4b>           │ #symbols <4b>       │
├────────────────────┴─────────────────────┤
│ ┌──────────────────────┬───────────────┐ │
│ │ len(str_1) <uvarint> │ str_1 <bytes> │ │
│ ├──────────────────────┴───────────────┤ │
│ │                . . .                 │ │
│ ├──────────────────────┬───────────────┤ │
│ │ len(str_n) <uvarint> │ str_n <bytes> │ │
│ └──────────────────────┴───────────────┘ │
├──────────────────────────────────────────┤
│ CRC32 <4b>                               │
└──────────────────────────────────────────┘

Series

The section contains a sequence of series that hold the label set of the series as well as its chunks within the block. The series are sorted lexicographically by their label sets.
Each series section is aligned to 16 bytes. The ID for a series is the offset/16. This serves as the series' ID in all subsequent references. Thereby, a sorted list of series IDs implies a lexicographically sorted list of series label sets.

┌───────────────────────────────────────┐
│ ┌───────────────────────────────────┐ │
│ │   series_1                        │ │
│ ├───────────────────────────────────┤ │
│ │                 . . .             │ │
│ ├───────────────────────────────────┤ │
│ │   series_n                        │ │
│ └───────────────────────────────────┘ │
└───────────────────────────────────────┘

Every series entry first holds its number of labels, followed by tuples of symbol table references that contain the label name and value. The label pairs are lexicographically sorted.
After the labels, the number of indexed chunks is encoded, followed by a sequence of metadata entries containing the chunks minimum (mint) and maximum (maxt) timestamp and a reference to its position in the chunk file. The mint is the time of the first sample and maxt is the time of the last sample in the chunk. Holding the time range data in the index allows dropping chunks irrelevant to queried time ranges without accessing them directly.

mint of the first chunk is stored, it's maxt is stored as a delta and the mint and maxt are encoded as deltas to the previous time for subsequent chunks. Similarly, the reference of the first chunk is stored and the next ref is stored as a delta to the previous one.

┌──────────────────────────────────────────────────────────────────────────┐
│ len <uvarint>                                                            │
├──────────────────────────────────────────────────────────────────────────┤
│ ┌──────────────────────────────────────────────────────────────────────┐ │
│ │                     labels count <uvarint64>                         │ │
│ ├──────────────────────────────────────────────────────────────────────┤ │
│ │              ┌────────────────────────────────────────────┐          │ │
│ │              │ ref(l_i.name) <uvarint32>                  │          │ │
│ │              ├────────────────────────────────────────────┤          │ │
│ │              │ ref(l_i.value) <uvarint32>                 │          │ │
│ │              └────────────────────────────────────────────┘          │ │
│ │                             ...                                      │ │
│ ├──────────────────────────────────────────────────────────────────────┤ │
│ │                     chunks count <uvarint64>                         │ │
│ ├──────────────────────────────────────────────────────────────────────┤ │
│ │              ┌────────────────────────────────────────────┐          │ │
│ │              │ c_0.mint <varint64>                        │          │ │
│ │              ├────────────────────────────────────────────┤          │ │
│ │              │ c_0.maxt - c_0.mint <uvarint64>            │          │ │
│ │              ├────────────────────────────────────────────┤          │ │
│ │              │ ref(c_0.data) <uvarint64>                  │          │ │
│ │              └────────────────────────────────────────────┘          │ │
│ │              ┌────────────────────────────────────────────┐          │ │
│ │              │ c_i.mint - c_i-1.maxt <uvarint64>          │          │ │
│ │              ├────────────────────────────────────────────┤          │ │
│ │              │ c_i.maxt - c_i.mint <uvarint64>            │          │ │
│ │              ├────────────────────────────────────────────┤          │ │
│ │              │ ref(c_i.data) - ref(c_i-1.data) <varint64> │          │ │
│ │              └────────────────────────────────────────────┘          │ │
│ │                             ...                                      │ │
│ └──────────────────────────────────────────────────────────────────────┘ │
├──────────────────────────────────────────────────────────────────────────┤
│ CRC32 <4b>                                                               │
└──────────────────────────────────────────────────────────────────────────┘

Label Index

A label index section indexes the existing (combined) values for one or more label names. The #names field determines the number of indexed label names, followed by the total number of entries in the #entries field. The body holds #entries / #names tuples of symbol table references, each tuple being of #names length. The value tuples are sorted in lexicographically increasing order.

┌───────────────┬────────────────┬────────────────┐
│ len <4b>      │ #names <4b>    │ #entries <4b>  │
├───────────────┴────────────────┴────────────────┤
│ ┌─────────────────────────────────────────────┐ │
│ │ ref(value_0) <4b>                           │ │
│ ├─────────────────────────────────────────────┤ │
│ │ ...                                         │ │
│ ├─────────────────────────────────────────────┤ │
│ │ ref(value_n) <4b>                           │ │
│ └─────────────────────────────────────────────┘ │
│                      . . .                      │
├─────────────────────────────────────────────────┤
│ CRC32 <4b>                                      │
└─────────────────────────────────────────────────┘

For instance, a single label name with 4 different values will be encoded as:

┌────┬───┬───┬──────────────┬──────────────┬──────────────┬──────────────┬───────┐
│ 24 │ 1 │ 4 │ ref(value_0) | ref(value_1) | ref(value_2) | ref(value_3) | CRC32 |
└────┴───┴───┴──────────────┴──────────────┴──────────────┴──────────────┴───────┘

The sequence of label index sections is finalized by a label offset table containing label offset entries that points to the beginning of each label index section for a given label name.

Postings

Postings sections store monotonically increasing lists of series references that contain a given label pair associated with the list.

┌────────────────────┬────────────────────┐
│ len <4b>           │ #entries <4b>      │
├────────────────────┴────────────────────┤
│ ┌─────────────────────────────────────┐ │
│ │ ref(series_1) <4b>                  │ │
│ ├─────────────────────────────────────┤ │
│ │ ...                                 │ │
│ ├─────────────────────────────────────┤ │
│ │ ref(series_n) <4b>                  │ │
│ └─────────────────────────────────────┘ │
├─────────────────────────────────────────┤
│ CRC32 <4b>                              │
└─────────────────────────────────────────┘

The sequence of postings sections is finalized by a postings offset table containing postings offset entries that points to the beginning of each postings section for a given label pair.

Label Offset Table

A label offset table stores a sequence of label offset entries. Every label offset entry holds the label name and the offset to its values in the label index section. They are used to track label index sections. They are read into memory when an index file is loaded.

┌─────────────────────┬──────────────────────┐
│ len <4b>            │ #entries <4b>        │
├─────────────────────┴──────────────────────┤
│ ┌────────────────────────────────────────┐ │
│ │  n = 1 <1b>                            │ │
│ ├──────────────────────┬─────────────────┤ │
│ │ len(name) <uvarint>  │ name <bytes>    │ │
│ ├──────────────────────┴─────────────────┤ │
│ │  offset <uvarint64>                    │ │
│ └────────────────────────────────────────┘ │
│                    . . .                   │
├────────────────────────────────────────────┤
│  CRC32 <4b>                                │
└────────────────────────────────────────────┘

Postings Offset Table

A postings offset table stores a sequence of postings offset entries, sorted by label name and value. Every postings offset entry holds the label name/value pair and the offset to its series list in the postings section. They are used to track postings sections. They are partially read into memory when an index file is loaded.

┌─────────────────────┬──────────────────────┐
│ len <4b>            │ #entries <4b>        │
├─────────────────────┴──────────────────────┤
│ ┌────────────────────────────────────────┐ │
│ │  n = 2 <1b>                            │ │
│ ├──────────────────────┬─────────────────┤ │
│ │ len(name) <uvarint>  │ name <bytes>    │ │
│ ├──────────────────────┼─────────────────┤ │
│ │ len(value) <uvarint> │ value <bytes>   │ │
│ ├──────────────────────┴─────────────────┤ │
│ │  offset <uvarint64>                    │ │
│ └────────────────────────────────────────┘ │
│                    . . .                   │
├────────────────────────────────────────────┤
│  CRC32 <4b>                                │
└────────────────────────────────────────────┘

TOC

The table of contents serves as an entry point to the entire index and points to various sections in the file. If a reference is zero, it indicates the respective section does not exist and empty results should be returned upon lookup.

┌─────────────────────────────────────────┐
│ ref(symbols) <8b>                       │
├─────────────────────────────────────────┤
│ ref(series) <8b>                        │
├─────────────────────────────────────────┤
│ ref(label indices start) <8b>           │
├─────────────────────────────────────────┤
│ ref(label offset table) <8b>            │
├─────────────────────────────────────────┤
│ ref(postings start) <8b>                │
├─────────────────────────────────────────┤
│ ref(postings offset table) <8b>         │
├─────────────────────────────────────────┤
│ CRC32 <4b>                              │
└─────────────────────────────────────────┘